RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 FAM53AQ6NSI3 398 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 APOBEC3HQ6NTF7 200 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF322Q6U7Q0 402 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MOB3CQ70IA8 216 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TAS1R1Q7RTX1 841 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PAQR4Q8N4S7 273 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 LHX4Q969G2 390 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ISL2Q96A47 359 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 GALNT14Q96FL9 552 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FYTTD1Q96QD9 318 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLX1AQ9BQ83 275 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZDHHC8Q9ULC8 765 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NUP210LQ5VU65 1888 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS51A0A1B0GVH4 220 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 BGLAPP02818 100 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TNFAIP6P98066 277 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MLLT11Q13015 90 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 C1orf61Q13536 156 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DOK3Q7L591 496 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ADGRE4PQ86SQ3 457 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR10W1Q8NGF6 305 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ADAMTS17Q8TE56 1095 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TTC9Q92623 222 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TFAP2CQ92754 450 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 KLK6Q92876 244 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 EMID1Q96A84 441 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PGPEP1Q9NXJ5 209 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ELOVL5Q9NYP7 299 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TBL2Q9Y4P3 447 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 KDM4EB2RXH2 506 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PLPP1O14494 284 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TGFB1I1O43294 461 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF737O75373 536 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NXPH3O95157 252 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FSHBP01225 129 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TFAP2AP05549 437 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF888P0CJ79 500 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 LOXL3P58215 753 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TSPAN31Q12999 210 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CCDC190Q86UF4 302 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR13A1Q8NGR1 328 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR4A5Q8NH83 315 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MRAPQ8TCY5 172 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MYOZ3Q8TDC0 251 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PDXPQ96GD0 296 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MARS2Q96GW9 593 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 RHOVQ96L33 236 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLC35B3Q9H1N7 401 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SMOC2Q9H3U7 446 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TXNRD2Q9NNW7 524 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 KCNMB3Q9NPA1 279 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 IL36GQ9NZH8 169 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLC22A13Q9Y226 551 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TRAV30A0A087WSZ9 112 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM262E9PQX1 116 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 VPREB1P12018 145 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 GABRB1P18505 474 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TIA1P31483 386 aaKnown RBP eCLIP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SLAQ13239 276 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 UNC119Q13432 240 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ODF1Q14990 250 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 OR1C1Q15619 314 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ACKR1Q16570 336 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS36Q5K4E3 855 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FAM166AQ6J272 317 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DRAM2Q6UX65 266 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM252Q8N6L7 170 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 C17orf77Q96MU5 243 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 NCOR1P1Q9H4R4 102 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MED29Q9NX70 200 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 UFC1Q9Y3C8 167 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 UPK2O00526 184 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 GRPP07492 148 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 APOC4P55056 127 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SPCS3P61009 180 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 SMN1Q16637 294 aaKnown RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TEX38Q6PEX7 206 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CADM3Q8N126 398 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 KCNG3Q8TAE7 436 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CSNK1G1Q9HCP0 422 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.49□□□□□ -2.01
SCN1A-219ENST00000641575 LOC107984156A0A0G2JMH3 177 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 C16orf97H3BN30 126 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ABLIM3O94929 683 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 GABRG2P18507 467 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ACRV1P26436 265 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DDTP30046 118 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TSPAN7P41732 249 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FNDC7Q5VTL7 733 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF813Q6ZN06 617 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DNM1P46Q6ZS02 220 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 ARL17AQ8IVW1 177 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 DUSP18Q8NEJ0 188 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 FCRL5Q96RD9 977 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 METTL26Q96S19 204 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 MAP1LC3AQ9H492 121 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 IL21Q9HBE4 155 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 TAAR2Q9P1P5 351 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 CBLCQ9ULV8 474 aa2.49□□□□□ -2.01
SCN1A-219ENST00000641575 YJEFN3A6XGL0 299 aa2.49□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms