RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 DIABLOQ9NR28 239 aa8.2□□□□□ -1.1
CLN3-261ENST00000637686 RASL12Q9NYN1 266 aa8.2□□□□□ -1.1
CLN3-261ENST00000637686 DNAJB11Q9UBS4 358 aa8.2□□□□□ -1.1
CLN3-261ENST00000637686 CLN8Q9UBY8 286 aa8.2□□□□□ -1.1
CLN3-261ENST00000637686 POLR3KQ9Y2Y1 108 aaPredicted RBP8.2□□□□□ -1.1
CLN3-261ENST00000637686 C2CD3Q4AC94 2353 aa8.2□□□□□ -1.1
CLN3-261ENST00000637686 LOC105371242A0A075B767 164 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 PPIAL4CA0A0B4J2A2 164 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 IGKV1-12A0A0C4DH73 117 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 A0A1B0GW55 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 J3QLI3 93 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DVL1O14640 695 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 CTDSPLO15194 276 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 TMPRSS2O15393 492 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 XRCC3O43542 346 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 HPGDSO60760 199 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 CA11O75493 328 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 IGKV1D-12P01611 117 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 TFF1P04155 84 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 GLAP06280 429 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 FAM157CP0CG43 387 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L2P0CJ85 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L3P0CJ86 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L4P0CJ87 422 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L5P0CJ88 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L6P0CJ89 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L7P0CJ90 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 MGMTP16455 207 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 SRD5A1P18405 259 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 ELK1P19419 428 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 AMY2BP19961 511 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 SRP14P37108 136 aaKnown RBP8.19□□□□□ -1.1
CLN3-261ENST00000637686 ZNF846Q147U1 533 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 MPV17LQ2QL34 196 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 SLC22A6Q4U2R8 563 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 PYHIN1Q6K0P9 492 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 CNIH2Q6PI25 160 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4L9Q6RFH8 374 aaPredicted RBP8.19□□□□□ -1.1
CLN3-261ENST00000637686 FIP1L1Q6UN15 594 aaKnown RBP8.19□□□□□ -1.1
CLN3-261ENST00000637686 RNF144BQ7Z419 303 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 C1QL2Q7Z5L3 287 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 PRIMA1Q86XR5 153 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 MFSD4AQ8N468 514 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 OR56B1Q8NGI3 324 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 FAM46BQ96A09 425 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 RFT1Q96AA3 541 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DIRAS2Q96HU8 199 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 Q96M66 194 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 ZNF488Q96MN9 340 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 NRIP2Q9BQI9 281 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 LPAR5Q9H1C0 372 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 C7orf69Q9H7B7 122 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 HES4Q9HCC6 221 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 PALMDQ9NP74 551 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 MTCH1Q9NZJ7 389 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 NLKQ9UBE8 527 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 KAAG1Q9UBP8 84 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 DUX4Q9UBX2 424 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 ING4Q9UNL4 249 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 INSIG2Q9Y5U4 225 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 V9GYH0 126 aa8.19□□□□□ -1.1
CLN3-261ENST00000637686 A0A0B4J203 849 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 IGHV2-70DA0A0C4DH43 119 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 FABP12A6NFH5 140 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 POM121CA8CG34 1229 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 FAM25AB3EWG3 89 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 FAM25CB3EWG5 89 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 FAM25GB3EWG6 89 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 RAB27BO00194 218 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 SPRY1O43609 319 aaPredicted RBP8.18□□□□□ -1.1
CLN3-261ENST00000637686 FCN3O75636 299 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 PLATP00750 562 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 EIF4EP06730 217 aaKnown RBP8.18□□□□□ -1.1
CLN3-261ENST00000637686 GATA3P23771 443 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 NPY4RP50391 375 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 PPP5CP53041 499 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 RBM11P57052 281 aaKnown RBP8.18□□□□□ -1.1
CLN3-261ENST00000637686 PITPNAQ00169 270 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 PAX2Q02962 417 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 IKZF1Q13422 519 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 SPIN3Q5JUX0 258 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 STUMQ69YW2 141 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 CMTM4Q8IZR5 234 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 BATF2Q8N1L9 274 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 OSR2Q8N2R0 312 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 FGFRL1Q8N441 504 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 FAM216BQ8N7L0 139 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 GDPD1Q8N9F7 314 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 OR5D18Q8NGL1 313 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 ANGPTL6Q8NI99 470 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 PHF21AQ96BD5 680 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 CCDC32Q9BV29 185 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 SPACA1Q9HBV2 294 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 EXTL2Q9UBQ6 330 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 OPN4Q9UHM6 478 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 HSF4Q9ULV5 492 aa8.18□□□□□ -1.1
CLN3-261ENST00000637686 DOCK11Q5JSL3 2073 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 KIR2DS1A0A191URI9 304 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 OR2AT4A6NND4 320 aa8.17□□□□□ -1.1
CLN3-261ENST00000637686 FOXI3A8MTJ6 420 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms