RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 HAND1O96004 215 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 CSF3P09919 207 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 LYNX1P0DP58 116 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 ZNF44P15621 663 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 CDK2P24941 298 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 COL8A2P25067 703 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 TNFSF8P32971 234 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 PDLIM4P50479 330 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 BTG1P62324 171 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 SCN1BQ07699 218 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 NKAPLQ5M9Q1 402 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 ATAD3CQ5T2N8 411 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 TEX36Q5VZQ5 186 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 SFRP4Q6FHJ7 346 aaPredicted RBP10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 CHST4Q8NCG5 386 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 OR10R2Q8NGX6 335 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 S100ZQ8WXG8 99 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 RAB1CQ92928 201 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 NUDT16L1Q9BRJ7 211 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 SPACA1Q9HBV2 294 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 DCAF16Q9NXF7 216 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 ARFGEF3Q5TH69 2177 aa10.07□□□□□ -0.8
SHKBP1-213ENST00000597325 IGHV4-30-2A0A087WSY4 118 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 A0A0A6YYD4 124 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 DEGS1O15121 323 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 XRCC3O43542 346 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 SSX4O60224 188 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 NDUFS7O75251 213 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 PDCD6O75340 191 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 ZNF205O95201 554 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 DUSP1P28562 367 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 BLVRBP30043 206 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 RBMXP38159 391 aaKnown RBP10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 MDH2P40926 338 aaKnown RBP10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 MNDAP41218 407 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 NR4A2P43354 598 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 GABRA2P47869 451 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 HOXA4Q00056 320 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 IL18Q14116 193 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 ARL6IP1Q15041 203 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 ZNF146Q15072 292 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 FAM201AQ5SY85 155 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 FAM131AQ6UXB0 335 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 MUC20Q8N307 709 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 FAM89BQ8N5H3 189 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 C19orf18Q8NEA5 215 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 DEFB108BQ8NET1 73 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 OR4M1Q8NGD0 313 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 NEK7Q8TDX7 302 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 C15orf40Q8WUR7 153 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 RAB3CQ96E17 227 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 SEH1LQ96EE3 360 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 TSC22D3Q99576 134 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 IFT22Q9H7X7 185 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 RABL2AQ9UBK7 228 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 RABL2BQ9UNT1 228 aa10.06□□□□□ -0.8
SHKBP1-213ENST00000597325 TRAV18A0A075B6X5 111 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 FABP12A6NFH5 140 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 RFPL4AA6NLU0 287 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 RFPL4AL1F8VTS6 287 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 SIRPB1O00241 398 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 HSPB6O14558 160 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 SOCS1O15524 211 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 TCF21O43680 179 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 OR2H2O95918 312 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 GYPAP02724 150 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PSG2P11465 335 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 ZNF16P17020 682 aaPredicted RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 FUT3P21217 361 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PRDX2P32119 198 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 GPR6P46095 362 aaPredicted RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 TMEM33P57088 247 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 MRPS15P82914 257 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PITPNAQ00169 270 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 LOXL1Q08397 574 aaPredicted RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PDCD1Q15116 288 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 ZMYND11Q15326 602 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PAN3Q58A45 887 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 FAM120AOSQ5T036 256 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 AVPI1Q5T686 147 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 STUMQ69YW2 141 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 CLEC2AQ6UVW9 174 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 IZUMO1Q8IYV9 350 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 ZNF525Q8N782 197 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 DTX3Q8N9I9 347 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 ASCC1Q8N9N2 400 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 OR5T2Q8NGG2 359 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PIMREGQ9BSJ6 248 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 PLEKHJ1Q9NW61 149 aa10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 MRPS7Q9Y2R9 242 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-213ENST00000597325 IGKV1D-17A0A075B6S4 117 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 MCRIP1C9JLW8 97 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 RAB27BO00194 218 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 NDUFA2O43678 99 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 FSTL3O95633 263 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 IGHV2-70P01814 119 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 GSTP1P09211 210 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 IGHV4-31P0DP07 118 aa10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 HIST1H1DP16402 221 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-213ENST00000597325 CHATP28329 748 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms