RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 GRK1Q15835 563 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 ATAD3CQ5T2N8 411 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 SIGIRRQ6IA17 410 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 BRICD5Q6PL45 260 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 BTN2A1Q7KYR7 527 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 LINC00596Q86U02 117 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 BPIFB2Q8N4F0 458 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 SUMF2Q8NBJ7 301 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 CHST4Q8NCG5 386 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 OR5H6Q8NGV6 325 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 PPP1R35Q8TAP8 253 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 H1FXQ92522 213 aaKnown RBP7.09□□□□□ -1.27
NUP88-211ENST00000575976 SLC25A46Q96AG3 418 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 TMEM186Q96B77 213 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 ISOC1Q96CN7 298 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 CYYR1Q96J86 154 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 BCL7BQ9BQE9 202 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 NICN1Q9BSH3 213 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 URM1Q9BTM9 101 aaKnown RBP7.09□□□□□ -1.27
NUP88-211ENST00000575976 FAM234AQ9H0X4 552 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 RBM38Q9H0Z9 239 aaKnown RBP7.09□□□□□ -1.27
NUP88-211ENST00000575976 PPA2Q9H2U2 334 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 MMP26Q9NRE1 261 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 FBLN5Q9UBX5 448 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 RAB22AQ9UL26 194 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 POLR3KQ9Y2Y1 108 aaPredicted RBP7.09□□□□□ -1.27
NUP88-211ENST00000575976 ACANP16112 2415 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 COL6A5A8TX70 2615 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 ATRQ13535 2644 aa7.09□□□□□ -1.27
NUP88-211ENST00000575976 YLPM1P49750 1951 aaKnown RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 TRAV20A0A0B4J274 112 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 IGHV2-70DA0A0C4DH43 119 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 DPPA5A6NC42 116 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A10PA6NDY2 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A18PA6NE21 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A16PA6NEW6 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A20PA6NIJ5 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A8PA6NJQ4 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A7PA6NKC0 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A22PA8MWA6 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A12PA8MX19 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A5PA8MXJ8 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A23PA8MXZ1 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 H3BMQ9 156 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 MGST3O14880 152 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 GPR37O15354 613 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 SOCS1O15524 211 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 CD5LO43866 347 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 ECDO95905 644 aaPredicted RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A15PP0C7V4 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A13PP0C7W8 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A14PP0C7W9 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM90A24PP0C7X0 464 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 RAB6AP20340 208 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 RORCP51449 518 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 DVL1P1P54792 670 aaPredicted RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 EDDM3AQ14507 147 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 PAN3Q58A45 887 aaKnown RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 CD276Q5ZPR3 534 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 GDPD3Q7L5L3 318 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 RTN4RL2Q86UN3 420 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 GLCCI1Q86VQ1 547 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 CROCCP3Q8IVE0 287 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 OR8H2Q8N162 312 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 FAM89BQ8N5H3 189 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 TPRX1Q8N7U7 411 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 LY6G5BQ8NDX9 201 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 OR4M1Q8NGD0 313 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 OR5D13Q8NGL4 314 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 LGALS14Q8TCE9 139 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 RAB40AQ8WXH6 277 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 DACT3Q96B18 629 aaPredicted RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 NUDT16L1Q9BRJ7 211 aaKnown RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 DCTN5Q9BTE1 182 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 DPCDQ9BVM2 203 aaPredicted RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 IFT22Q9H7X7 185 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 C19orf12Q9NSK7 152 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 HIF1ANQ9NWT6 349 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 ING3Q9NXR8 418 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 ABRACLQ9P1F3 81 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 RCC2Q9P258 522 aaKnown RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 RPUSD1Q9UJJ7 312 aaKnown RBP7.08□□□□□ -1.28
NUP88-211ENST00000575976 INSIG2Q9Y5U4 225 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 PEX16Q9Y5Y5 336 aa7.08□□□□□ -1.28
NUP88-211ENST00000575976 MAP1AP78559 2803 aaPredicted RBP7.07□□□□□ -1.28
NUP88-211ENST00000575976 FN1P02751 2386 aaKnown RBP7.07□□□□□ -1.28
NUP88-211ENST00000575976 PPIAL4CA0A0B4J2A2 164 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 KIR2DS1A0A191URI9 304 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 FOXI3A8MTJ6 420 aaPredicted RBP7.07□□□□□ -1.28
NUP88-211ENST00000575976 MCRIP1C9JLW8 97 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 ENSAO43768 121 aaKnown RBP7.07□□□□□ -1.28
NUP88-211ENST00000575976 TMEM127O75204 238 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 PPIAL4GP0DN37 164 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 FUT3P21217 361 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 CHATP28329 748 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 ERP29P30040 261 aaKnown RBP7.07□□□□□ -1.28
NUP88-211ENST00000575976 BLVRBP30043 206 aaPredicted RBP7.07□□□□□ -1.28
NUP88-211ENST00000575976 GLIPR1P48060 266 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 VEGFCP49767 419 aa7.07□□□□□ -1.28
NUP88-211ENST00000575976 TMEM50BP56557 158 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms