RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 IGLV1-40P01703 118 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 PPIFP30405 207 aaKnown RBP13.85□□□□□ -0.19
CLK3-227ENST00000570296 SOX6P35712 828 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 ANKRD13BQ86YJ7 626 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 Q8IYB0 196 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 KIRREL1Q96J84 757 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 LRGUKQ96M69 825 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 S1PR3Q99500 378 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 ELOVL1Q9BW60 279 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 PBOV1Q9GZY1 135 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 PLSCR3Q9NRY6 295 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 IL36RNQ9UBH0 155 aa13.85□□□□□ -0.19
CLK3-227ENST00000570296 TMEM269A0A1B0GVZ9 245 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 ODAMA1E959 279 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 ZNF729A6NN14 1252 aaPredicted RBP13.84□□□□□ -0.19
CLK3-227ENST00000570296 GLIPR1P48060 266 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 ZNF146Q15072 292 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 LINC00322Q6ZN03 302 aaPredicted RBP13.84□□□□□ -0.19
CLK3-227ENST00000570296 GTSCR1Q86UQ5 136 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 OR8H1Q8NGG4 311 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 CADM1Q9BY67 442 aaKnown RBP13.84□□□□□ -0.19
CLK3-227ENST00000570296 ALX4Q9H161 411 aaPredicted RBP13.84□□□□□ -0.19
CLK3-227ENST00000570296 MRGBPQ9NV56 204 aa13.84□□□□□ -0.19
CLK3-227ENST00000570296 CXorf65A6NEN9 183 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 RIIAD1A6NNX1 92 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 BRI3O95415 125 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 ZNF3P17036 446 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 RAB9AP51151 201 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 ZNF816Q0VGE8 651 aaPredicted RBP13.83□□□□□ -0.2
CLK3-227ENST00000570296 MAPRE2Q15555 327 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 C17orf58Q2M2W7 97 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 SPIN3Q5JUX0 258 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 TOLLIPQ9H0E2 274 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 TPSG1Q9NRR2 321 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 KRT84Q9NSB2 600 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 KLHDC2Q9Y2U9 406 aa13.83□□□□□ -0.2
CLK3-227ENST00000570296 DYNC1H1Q14204 4646 aaKnown RBP13.83□□□□□ -0.2
CLK3-227ENST00000570296 IGHV1-3A0A0C4DH29 117 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 FAM230AA0A1W2PPH8 454 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 HSD17B6O14756 317 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 DUSP1P28562 367 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 AESQ08117 197 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 SAMD4BQ5PRF9 694 aaKnown RBP13.82□□□□□ -0.2
CLK3-227ENST00000570296 RASSF6Q6ZTQ3 369 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 MOB3BQ86TA1 216 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 OR2T33Q8NG76 320 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 MNTQ99583 582 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 TSSK6Q9BXA6 273 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 MED20Q9H944 212 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 NUFIP1Q9UHK0 495 aaKnown RBP13.82□□□□□ -0.2
CLK3-227ENST00000570296 DNAH11Q96DT5 4516 aa13.82□□□□□ -0.2
CLK3-227ENST00000570296 FAT2Q9NYQ8 4349 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 IGHV4OR15-8A0A075B7B6 117 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 A0A087WW49 117 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 KBTBD11-OT1A0A1B0GTJ5 212 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 FAM90A10PA6NDY2 464 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 H0Y980 276 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 SIRPB1O00241 398 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 SELENOFO60613 162 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 INMTO95050 263 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 LGALS1P09382 135 aaKnown RBP13.81□□□□□ -0.2
CLK3-227ENST00000570296 SF3A3Q12874 501 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLK3-227ENST00000570296 GALEQ14376 348 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 DEGS2Q6QHC5 323 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 SLC25A26Q70HW3 274 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 FAM58AQ8N1B3 248 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 THAP7Q9BT49 309 aaPredicted RBP13.81□□□□□ -0.2
CLK3-227ENST00000570296 RSRP1Q9BUV0 290 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 CMC2Q9NRP2 79 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 MRM2Q9UI43 246 aaKnown RBP13.81□□□□□ -0.2
CLK3-227ENST00000570296 SAMD4AQ9UPU9 718 aaKnown RBP13.81□□□□□ -0.2
CLK3-227ENST00000570296 PSG11Q9UQ72 335 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 V9GYS6 101 aa13.81□□□□□ -0.2
CLK3-227ENST00000570296 IGHV3-72A0A0B4J1Y9 119 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 TRBV2A0A0J9YWF9 115 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 DHRS7CA6NNS2 312 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 ARPC1BO15143 372 aaKnown RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 ENTPD6O75354 484 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 MOSP00540 346 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 GAPDHP04406 335 aaKnown RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 CSN2P05814 226 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 NCK1P16333 377 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 MFGE8Q08431 387 aaPredicted RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 PMS2P11Q13670 270 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 LGALS9CQ6DKI2 356 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 CEMP1Q6PRD7 247 aaPredicted RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 OR10X1Q8NGY0 326 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 LEAP2Q969E1 77 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 TMEM106AQ96A25 262 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 FLYWCH2Q96CP2 140 aaKnown RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 RBFOX1Q9NWB1 397 aaKnown RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 FAM53CQ9NYF3 392 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 OR6C3Q9NZP0 311 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 ZNF107Q9UII5 783 aaPredicted RBP13.8□□□□□ -0.2
CLK3-227ENST00000570296 HERC1Q15751 4861 aa13.8□□□□□ -0.2
CLK3-227ENST00000570296 IGKV1-27A0A075B6S5 117 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 SHISA3A0PJX4 238 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 E2F6O75461 281 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 IGHV3-7P01780 117 aa13.79□□□□□ -0.2
CLK3-227ENST00000570296 TTRP02766 147 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms