RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TNFAIP8L1Q8WVP5 186 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 TFAP2CQ92754 450 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 FOXRED1Q96CU9 486 aaPredicted RBP16.44■□□□□ 0.22
CLK3-225ENST00000569063 GPER1Q99527 375 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 PPA2Q9H2U2 334 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 TMEM138Q9NPI0 162 aa16.44■□□□□ 0.22
CLK3-225ENST00000569063 TRGV10A0A0A0MS01 117 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 TRBV5-5A0A0J9YX44 114 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 XPNPEP2O43895 674 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 GLIPR1P48060 266 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 AESQ08117 197 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 YIF1BQ5BJH7 314 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 LDLRAD2Q5SZI1 272 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 TRAPPC6BQ86SZ2 158 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 OR51T1Q8NGJ9 327 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 PGLYRP3Q96LB9 341 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 TMEM133Q9H2Q1 129 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 GAL3ST2Q9H3Q3 398 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 TAS2R3Q9NYW6 316 aa16.43■□□□□ 0.22
CLK3-225ENST00000569063 IGHV2-26A0A0B4J1V2 119 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 GPX5O75715 221 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 PTGFRP43088 359 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 KRTAP10-3P60369 221 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 RPS11P62280 158 aaKnown RBP eCLIP16.42■□□□□ 0.22
CLK3-225ENST00000569063 PPP3R1P63098 170 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 DYNC1I2Q13409 638 aaKnown RBP16.42■□□□□ 0.22
CLK3-225ENST00000569063 LY6EQ16553 131 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 SLC35E4Q6ICL7 350 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 LIAT1Q6ZQX7 453 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 COQ2Q96H96 371 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 FAM192AQ9GZU8 254 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 RAB18Q9NP72 206 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 FKBP14Q9NWM8 211 aa16.42■□□□□ 0.22
CLK3-225ENST00000569063 NKX1-2Q9UD57 310 aaPredicted RBP16.42■□□□□ 0.22
CLK3-225ENST00000569063 NBEAL1Q6ZS30 2694 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 ODAMA1E959 279 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 MMP23AO75900 390 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 IGFBP3P17936 291 aaPredicted RBP16.41■□□□□ 0.22
CLK3-225ENST00000569063 C21orf33P30042 268 aaPredicted RBP16.41■□□□□ 0.22
CLK3-225ENST00000569063 BDKRB2P30411 391 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 ZNF93P35789 620 aaPredicted RBP16.41■□□□□ 0.22
CLK3-225ENST00000569063 TAS2R43P59537 309 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 SLC34A1Q06495 639 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 IL13RA2Q14627 380 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 RSU1Q15404 277 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 Q499Y3 187 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 KRBOX4Q5JUW0 171 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 MINOS1Q5TGZ0 78 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 OR52W1Q6IF63 320 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 BRICD5Q6PL45 260 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 HEPN1Q6WQI6 88 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 AHSA2Q719I0 299 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 STX19Q8N4C7 294 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 ZFP41Q8N8Y5 198 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 BPIFB6Q8NFQ5 453 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 OR13C5Q8NGS8 318 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 NR1H4Q96RI1 486 aaPredicted RBP16.41■□□□□ 0.22
CLK3-225ENST00000569063 CLEC7AQ9BXN2 247 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 FBLN5Q9UBX5 448 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 MINOS1-NBL1R4GNA1 71 aa16.41■□□□□ 0.22
CLK3-225ENST00000569063 H0YJX3 145 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 OR3A4PP47883 348 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 RIPK1Q13546 671 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 SSX2Q16385 188 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 DDI2Q5TDH0 399 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 ORAI1Q96D31 301 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 CDCA4Q9BXL8 241 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 NCOR1P1Q9H4R4 102 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 IL36GQ9NZH8 169 aa16.4■□□□□ 0.22
CLK3-225ENST00000569063 TRAV24A0A0B4J272 114 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 CD1AP06126 327 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 CDK2P24941 298 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 KIR2DS4P43632 304 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 DYNLT3P51808 116 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 WNT4P56705 351 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 ATXN7L3Q14CW9 347 aaPredicted RBP16.39■□□□□ 0.21
CLK3-225ENST00000569063 FAM189A2Q15884 450 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 NHLRC3Q5JS37 347 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 PRAMEF5Q5TYX0 476 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 RTN4RL2Q86UN3 420 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 ABHD12Q8N2K0 398 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 NANOGP1Q8N7R0 232 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 OR10K1Q8NGX5 313 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 NKX3-1Q99801 234 aaPredicted RBP16.39■□□□□ 0.21
CLK3-225ENST00000569063 METTL9Q9H1A3 318 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 RANBP3Q9H6Z4 567 aaPredicted RBP16.39■□□□□ 0.21
CLK3-225ENST00000569063 OR6C3Q9NZP0 311 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 CKLFQ9UBR5 152 aa16.39■□□□□ 0.21
CLK3-225ENST00000569063 TRBV5-7A0A0A0MS05 114 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 MEGF11A6BM72 1044 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 MYL12BO14950 172 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 CDRT1O95170 752 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 HTR3BO95264 441 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 FSTP19883 344 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 GABRA5P31644 462 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 RAB13P51153 203 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 PAX5Q02548 391 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 PIGYQ3MUY2 71 aa16.38■□□□□ 0.21
CLK3-225ENST00000569063 PAN3Q58A45 887 aaKnown RBP16.38■□□□□ 0.21
CLK3-225ENST00000569063 RNLSQ5VYX0 342 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms