RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 QRFPP83859 136 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 IL13RA2Q14627 380 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 TAF9Q16594 264 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 NHLRC3Q5JS37 347 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 BRICD5Q6PL45 260 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 PRIMA1Q86XR5 153 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 BPIFB2Q8N4F0 458 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 POM121Q96HA1 1249 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 ING3Q9NXR8 418 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 GLS2Q9UI32 602 aa16.07■□□□□ 0.16
CLN3-225ENST00000566824 TRBV23-1A0A0A0MS06 115 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 CRTAPO75718 401 aaPredicted RBP16.06■□□□□ 0.16
CLN3-225ENST00000566824 TOX4O94842 621 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 VSIG8P0DPA2 414 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 MGMTP16455 207 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 HTR2CP28335 458 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 TGFBR1P36897 503 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 AESQ08117 197 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 UNC119Q13432 240 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 GDPD3Q7L5L3 318 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 C11orf42Q8N5U0 333 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 C22orf15Q8WYQ4 148 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 FOXRED1Q96CU9 486 aaPredicted RBP16.06■□□□□ 0.16
CLN3-225ENST00000566824 COQ2Q96H96 371 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 CENPOQ9BU64 300 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 SELENOIQ9C0D9 397 aa16.06■□□□□ 0.16
CLN3-225ENST00000566824 LOC100506127A0A0U1RQW1 187 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 SLC17A2O00624 439 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 MGST3O14880 152 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 ZNF780AO75290 641 aaPredicted RBP16.05■□□□□ 0.16
CLN3-225ENST00000566824 CLEC2LP0C7M8 214 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 GTF2F2P13984 249 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 GLIPR1P48060 266 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 DLX6P56179 175 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 PLA2G7Q13093 441 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 ATXN7L3Q14CW9 347 aaPredicted RBP16.05■□□□□ 0.16
CLN3-225ENST00000566824 HES5Q5TA89 166 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 METTL11BQ5VVY1 283 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 VMO1Q7Z5L0 202 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 PDZD9Q8IXQ8 264 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 BCL6BQ8N143 479 aaPredicted RBP16.05■□□□□ 0.16
CLN3-225ENST00000566824 OR6M1Q8NGM8 313 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 NANPQ8TBE9 248 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 PLPPR1Q8TBJ4 325 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 PLGRKTQ9HBL7 147 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 SIRT7Q9NRC8 400 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 ZNF69Q9UC07 566 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 SSR3Q9UNL2 185 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 V9GY05 133 aa16.05■□□□□ 0.16
CLN3-225ENST00000566824 A0A0B4J203 849 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 TRAV40A0A0B4J280 105 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 OR7C1O76099 320 aaPredicted RBP16.04■□□□□ 0.16
CLN3-225ENST00000566824 MPIG6BO95866 241 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 KLRD1Q13241 179 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 GPR176Q14439 515 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 PAN3Q58A45 887 aaKnown RBP16.04■□□□□ 0.16
CLN3-225ENST00000566824 RUSC1-AS1Q66K80 236 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 SIGIRRQ6IA17 410 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 RTN4RL2Q86UN3 420 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 KIR3DL3Q8N743 410 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 SUMF2Q8NBJ7 301 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 CHST4Q8NCG5 386 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 OR5D13Q8NGL4 314 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 Q96M66 194 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 KPTNQ9Y664 436 aa16.04■□□□□ 0.16
CLN3-225ENST00000566824 CENPVL3A0A0U1RRI6 287 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 TMEM14DPA8MWL7 114 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 SLC2A2P11168 524 aaPredicted RBP16.03■□□□□ 0.16
CLN3-225ENST00000566824 MYL9P24844 172 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 P2RX3P56373 397 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 RAB11BQ15907 218 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 BRD3OSQ6XYD6 125 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 OR51D1Q8NGF3 324 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 TNFRSF14Q92956 283 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 LHX4Q969G2 390 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 NICN1Q9BSH3 213 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 DPCDQ9BVM2 203 aaPredicted RBP16.03■□□□□ 0.16
CLN3-225ENST00000566824 IFT22Q9H7X7 185 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 VCX3AQ9NNX9 186 aa16.03■□□□□ 0.16
CLN3-225ENST00000566824 A0A0A6YYD4 124 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 RNASEK-C17orf49H0YIS7 233 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 BPNT1O95861 308 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 RAB3BP20337 219 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 EPHA1P21709 976 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 SDC2P34741 201 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 SRSF2Q01130 221 aaKnown RBP16.02■□□□□ 0.16
CLN3-225ENST00000566824 ATAD3CQ5T2N8 411 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 HCP5Q6MZN7 132 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 PNKDQ8N490 385 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 PCDHB16Q9NRJ7 776 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 GHRLQ9UBU3 117 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 NUP50Q9UKX7 468 aa16.02■□□□□ 0.16
CLN3-225ENST00000566824 TRAV39A0A0B4J263 110 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 M0R1W7 72 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 PDCD5O14737 125 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 CSN2P05814 226 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 UBBP0CG47 229 aa16.01■□□□□ 0.15
CLN3-225ENST00000566824 ERP29P30040 261 aaKnown RBP16.01■□□□□ 0.15
CLN3-225ENST00000566824 LSM3P62310 102 aaKnown RBP16.01■□□□□ 0.15
CLN3-225ENST00000566824 RPS27AP62979 156 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms