RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 BABAM2Q9NXR7 383 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 PITPNC1Q9UKF7 332 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 MINOS1-NBL1R4GNA1 71 aa16.75■□□□□ 0.27
CLN3-219ENST00000565778 SLC33A1O00400 549 aaPredicted RBP16.74■□□□□ 0.27
CLN3-219ENST00000565778 CHST1O43916 411 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 CDK2P24941 298 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 SLC34A1Q06495 639 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 MED21Q13503 144 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 CDK5R1Q15078 307 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 C11orf88Q6PI97 169 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 CCBE1Q6UXH8 406 aaPredicted RBP16.74■□□□□ 0.27
CLN3-219ENST00000565778 Q6ZTK2 550 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 PACRGLQ8N7B6 248 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 TNFAIP8L1Q8WVP5 186 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 CDCA4Q9BXL8 241 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 MMP27Q9H306 513 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 TAS2R4Q9NYW5 299 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 TAS2R3Q9NYW6 316 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 TCF19Q9Y242 345 aa16.74■□□□□ 0.27
CLN3-219ENST00000565778 EXOSC1Q9Y3B2 195 aaKnown RBP16.74■□□□□ 0.27
CLN3-219ENST00000565778 WIPF1O43516 503 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 HTR1DP28221 377 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 EFNB2P52799 333 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 RCN1Q15293 331 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 RSU1Q15404 277 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 PRAMEF5Q5TYX0 476 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 TMEM219Q86XT9 240 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 PXT1Q8NFP0 134 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 OR51A2Q8NGJ7 313 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 RGP1Q92546 391 aaPredicted RBP16.73■□□□□ 0.27
CLN3-219ENST00000565778 TMEM80Q96HE8 168 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 FAM192AQ9GZU8 254 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.73■□□□□ 0.27
CLN3-219ENST00000565778 CLEC2DQ9UHP7 191 aa16.73■□□□□ 0.27
CLN3-219ENST00000565778 DIMT1Q9UNQ2 313 aaKnown RBP16.73■□□□□ 0.27
CLN3-219ENST00000565778 SIRT4Q9Y6E7 314 aaPredicted RBP16.73■□□□□ 0.27
CLN3-219ENST00000565778 ODAMA1E959 279 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 A6NDX4 124 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 H0YJX3 145 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 H3BUI4 141 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 GABRPO00591 440 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 OGG1O15527 345 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 CSN2P05814 226 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 JUNBP17275 347 aaPredicted RBP16.72■□□□□ 0.27
CLN3-219ENST00000565778 ADARB1P78563 741 aaKnown RBP16.72■□□□□ 0.27
CLN3-219ENST00000565778 ATXN7L3Q14CW9 347 aaPredicted RBP16.72■□□□□ 0.27
CLN3-219ENST00000565778 HERPUD1Q15011 391 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 ELP2Q6IA86 826 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 ZNF529Q6P280 563 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 BAIAP2L2Q6UXY1 529 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 HEPN1Q6WQI6 88 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 OR4D6Q8NGJ1 314 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 TMEM106AQ96A25 262 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 ING4Q9UNL4 249 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 FOXJ3Q9UPW0 622 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 ZNF281Q9Y2X9 895 aa16.72■□□□□ 0.27
CLN3-219ENST00000565778 F2RL2O00254 374 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 HSPB6O14558 160 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 KCNAB3O43448 404 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 HTR3BO95264 441 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 ALDOBP05062 364 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 VSIG10L2P0DP72 767 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 DYNLT3P51808 116 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 PPP3R1P63098 170 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 DEFA6Q01524 100 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 RTN4RL2Q86UN3 420 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 C11orf44Q8N8P7 122 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 OR10K1Q8NGX5 313 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 FAM110DQ8TAY7 271 aaPredicted RBP16.71■□□□□ 0.27
CLN3-219ENST00000565778 ZNF596Q8TC21 504 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 GGHQ92820 318 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 COQ2Q96H96 371 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 TMEM138Q9NPI0 162 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 DPM3Q9P2X0 92 aa16.71■□□□□ 0.27
CLN3-219ENST00000565778 FAM172BPA6NC97 362 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 TOR1AO14656 332 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 PTGFRP43088 359 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 C2orf68Q2NKX9 166 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 PAN3Q58A45 887 aaKnown RBP16.7■□□□□ 0.26
CLN3-219ENST00000565778 KLHDC1Q8N7A1 406 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 ZNF565Q8N9K5 539 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 GHSRQ92847 366 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 SMIM19Q96E16 107 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 BARHL1Q9BZE3 327 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 PRSS22Q9GZN4 317 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 PPIL3Q9H2H8 161 aaKnown RBP16.7■□□□□ 0.26
CLN3-219ENST00000565778 OR6C3Q9NZP0 311 aa16.7■□□□□ 0.26
CLN3-219ENST00000565778 MEGF11A6BM72 1044 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 ZNF729A6NN14 1252 aaPredicted RBP16.69■□□□□ 0.26
CLN3-219ENST00000565778 CDRT1O95170 752 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 TSPAN15O95858 294 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 LALBAP00709 142 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 CSF1P09603 554 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 ZNF93P35789 620 aaPredicted RBP16.69■□□□□ 0.26
CLN3-219ENST00000565778 GDNFP39905 211 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 OR3A4PP47883 348 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 PRRX1P54821 245 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 ST3GAL4Q11206 333 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 OR51T1Q8NGJ9 327 aa16.69■□□□□ 0.26
CLN3-219ENST00000565778 OR4P4Q8NGL7 312 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms