RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DHDHQ9UQ10 334 aa11.97□□□□□ -0.49
CLN3-213ENST00000565047 GABRPO00591 440 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 TSPAN15O95858 294 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 TMEM225BP0DP42 221 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 CD34P28906 385 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 MTNR1BP49286 362 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 C17orf58Q2M2W7 97 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 C11orf88Q6PI97 169 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 ZNF555Q8NEP9 628 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 BABAM2Q9NXR7 383 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 TAS2R4Q9NYW5 299 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.96□□□□□ -0.49
CLN3-213ENST00000565047 DIMT1Q9UNQ2 313 aaKnown RBP11.96□□□□□ -0.49
CLN3-213ENST00000565047 FOXJ3Q9UPW0 622 aa11.96□□□□□ -0.49
CLN3-213ENST00000565047 A0A087X0M5 115 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 TRAV24A0A0B4J272 114 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 A0A1B0GX30 115 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 ODAMA1E959 279 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 LY6LH3BQJ8 138 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 ALDOBP05062 364 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 HCKP08631 526 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 RAB3AP20336 220 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 CDK2P24941 298 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 RPS11P62280 158 aaKnown RBP eCLIP11.95□□□□□ -0.5
CLN3-213ENST00000565047 BDH1Q02338 343 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 PAX5Q02548 391 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 DOC2BQ14184 412 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 HERPUD1Q15011 391 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 FAM189A2Q15884 450 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 LRRC36Q1X8D7 754 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 PLA1AQ53H76 456 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 FBLN7Q53RD9 439 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 PRAMEF5Q5TYX0 476 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 HIST2H2BDQ6DRA6 164 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 DMKNQ6E0U4 476 aaPredicted RBP11.95□□□□□ -0.5
CLN3-213ENST00000565047 Q6ZS46 218 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 ABHD12Q8N2K0 398 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 PACRGLQ8N7B6 248 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 OR4C13Q8NGP0 309 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 GPR148Q8TDV2 347 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 FBLIM1Q8WUP2 373 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 GGHQ92820 318 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 CLEC7AQ9BXN2 247 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 NPFFR1Q9GZQ6 430 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 PPIL3Q9H2H8 161 aaKnown RBP11.95□□□□□ -0.5
CLN3-213ENST00000565047 NCOR1P1Q9H4R4 102 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 LINC00574Q9H8X3 128 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 NEK6Q9HC98 313 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 ZNF581Q9P0T4 197 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 HILPDAQ9Y5L2 63 aa11.95□□□□□ -0.5
CLN3-213ENST00000565047 DNAH3Q8TD57 4116 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 TRBV5-5A0A0J9YX44 114 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 DEGS1O15121 323 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 OCM2P0CE71 109 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 OCMP0CE72 109 aaPredicted RBP11.94□□□□□ -0.5
CLN3-213ENST00000565047 ZNF44P15621 663 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 IGFBP3P17936 291 aaPredicted RBP11.94□□□□□ -0.5
CLN3-213ENST00000565047 SOX2P48431 317 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 DEFA6Q01524 100 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 DYNC1I2Q13409 638 aaKnown RBP11.94□□□□□ -0.5
CLN3-213ENST00000565047 HABP2Q14520 560 aaPredicted RBP11.94□□□□□ -0.5
CLN3-213ENST00000565047 TTC23Q5W5X9 447 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 TMEM219Q86XT9 240 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 TSEN15Q8WW01 171 aaKnown RBP11.94□□□□□ -0.5
CLN3-213ENST00000565047 SMIM19Q96E16 107 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 PGLYRP3Q96LB9 341 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 NKX3-1Q99801 234 aaPredicted RBP11.94□□□□□ -0.5
CLN3-213ENST00000565047 WNT10AQ9GZT5 417 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 C8orf4Q9NR00 106 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 NOTCH1P46531 2555 aa11.94□□□□□ -0.5
CLN3-213ENST00000565047 TRGV10A0A0A0MS01 117 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 GPX5O75715 221 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 HTR1DP28221 377 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 BLCAPP62952 87 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 SCN1BQ07699 218 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 IL13RA2Q14627 380 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 ATXN7L3Q14CW9 347 aaPredicted RBP11.93□□□□□ -0.5
CLN3-213ENST00000565047 NHLRC3Q5JS37 347 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 KRBOX4Q5JUW0 171 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 OGFRL1Q5TC84 451 aaPredicted RBP11.93□□□□□ -0.5
CLN3-213ENST00000565047 TMPRSS11AQ6ZMR5 421 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 RTN4RL2Q86UN3 420 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 KLHDC1Q8N7A1 406 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 OR13C5Q8NGS8 318 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 OR52N1Q8NH53 320 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 OR2T6Q8NHC8 308 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 TNFAIP8L1Q8WVP5 186 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 STMN2Q93045 179 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 TMEM106AQ96A25 262 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 ORAI1Q96D31 301 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 TMEM80Q96HE8 168 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 GAL3ST2Q9H3Q3 398 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 IFT22Q9H7X7 185 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 ZNF286AQ9HBT8 521 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 IL36GQ9NZH8 169 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 DPM3Q9P2X0 92 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 ZNF281Q9Y2X9 895 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 EXOSC1Q9Y3B2 195 aaKnown RBP11.93□□□□□ -0.5
CLN3-213ENST00000565047 PCDHGB5Q9Y5G0 923 aa11.93□□□□□ -0.5
CLN3-213ENST00000565047 IRGMA1A4Y4 181 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms