RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 FAM234AQ9H0X4 552 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 CNTD2Q9H8S5 307 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 RHOFQ9HBH0 211 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 AKIP1Q9NQ31 210 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 C19orf12Q9NSK7 152 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 ONECUT1Q9UBC0 465 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 CKLFQ9UBR5 152 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 ZNF69Q9UC07 566 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 KPTNQ9Y664 436 aa7.71□□□□□ -1.18
LDLR-211ENST00000560173 TRAV1-2A0A0B4J238 106 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 A0A1W2PPK0 400 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 A0A1W2PQ09 198 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 PDCD5O14737 125 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 WIPF1O43516 503 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 TCF21O43680 179 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 TK1P04183 234 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 CALRP27797 417 aaKnown RBP7.7□□□□□ -1.18
LDLR-211ENST00000560173 DUSP1P28562 367 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 SDC2P34741 201 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 ZNF93P35789 620 aaPredicted RBP7.7□□□□□ -1.18
LDLR-211ENST00000560173 RPS19P39019 145 aaKnown RBP7.7□□□□□ -1.18
LDLR-211ENST00000560173 ETV6P41212 452 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 OR3A4PP47883 348 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 PSMD7P51665 324 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 PPP5CP53041 499 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 SNU13P55769 128 aaKnown RBP7.7□□□□□ -1.18
LDLR-211ENST00000560173 INSL4Q14641 139 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 ELP2Q6IA86 826 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 UNQ9370/PRO34162Q6UXP9 181 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 ASCL4Q6XD76 172 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 C17orf107Q6ZR85 190 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 C9orf139Q6ZV77 190 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 CMTM4Q8IZR5 234 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 FAM185AQ8N0U4 392 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 Q8N7P7 452 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 ASCC1Q8N9N2 400 aaKnown RBP7.7□□□□□ -1.18
LDLR-211ENST00000560173 MINDY2Q8NBR6 621 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 C22orf15Q8WYQ4 148 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 TMEM158Q8WZ71 300 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 NKX3-1Q99801 234 aaPredicted RBP7.7□□□□□ -1.18
LDLR-211ENST00000560173 SLITRK2Q9H156 845 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 OCEL1Q9H607 264 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 NOX4Q9NPH5 578 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 FOXJ3Q9UPW0 622 aa7.7□□□□□ -1.18
LDLR-211ENST00000560173 A0A0A6YYJ9 748 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 CENPVL3A0A0U1RRI6 287 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 M0R1W7 72 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 PSPNO60542 156 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 SC5DO75845 299 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 FPR2P25090 351 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 PTBP1P26599 531 aaKnown RBP eCLIP7.69□□□□□ -1.18
LDLR-211ENST00000560173 PTGFRP43088 359 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 OR3A1P47881 315 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 HILS1P60008 231 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 RPL31P62899 125 aaKnown RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 SRSF2Q01130 221 aaKnown RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 PDCD1Q15116 288 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 ACSM3Q53FZ2 586 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 GPR157Q5UAW9 335 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 Q6P435 159 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 METAP1DQ6UB28 335 aaPredicted RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 C1orf122Q6ZSJ8 110 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 VMO1Q7Z5L0 202 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 CEACAM19Q7Z692 300 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 LYPD6Q86Y78 171 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 BCL6BQ8N143 479 aaPredicted RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 OR8H2Q8N162 312 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 Q8NFD4 153 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 ZNF418Q8TF45 676 aaPredicted RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 SNX22Q96L94 193 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 CCDC32Q9BV29 185 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 SUCNR1Q9BXA5 334 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 UNKLQ9H9P5 680 aaKnown RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 IL36GQ9NZH8 169 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 RABL2AQ9UBK7 228 aaPredicted RBP7.69□□□□□ -1.18
LDLR-211ENST00000560173 GLS2Q9UI32 602 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 RABL2BQ9UNT1 228 aa7.69□□□□□ -1.18
LDLR-211ENST00000560173 IGHV1-69DA0A0B4J2H0 117 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 SIRPB1O00241 398 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 SH2D1BO14796 132 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 RGS5O15539 181 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 VENTXO95231 258 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 OR2H2O95918 312 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 IGHV1-69P01742 117 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 UCHL1P09936 223 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 GABRR1P24046 479 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 BPIFB3P59826 476 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 ZNF273Q14593 569 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 IL13RA2Q14627 380 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 RSU1Q15404 277 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 GRK1Q15835 563 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 FAM27D1Q5T7N8 215 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 RUSC1-AS1Q66K80 236 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 TMEM200BQ69YZ2 307 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 BRD3OSQ6XYD6 125 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 TMEM91Q6ZNR0 172 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 CDH26Q8IXH8 852 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 JAGN1Q8N5M9 183 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 NKAIN3Q8N8D7 197 aa7.68□□□□□ -1.18
LDLR-211ENST00000560173 CHST4Q8NCG5 386 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms