RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 LOC100506127A0A0U1RQW1 187 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 hCG_1809904A0A1W2PP81 198 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PPE2 198 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PR64 198 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PRV1 198 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 hADV38S2A0JD32 116 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 FUOMA2VDF0 154 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 GEMIN2O14893 280 aaKnown RBP9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 MPIG6BO95866 241 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 UBBP0CG47 229 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 MMP9P14780 707 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 MGMTP16455 207 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 GALP22466 123 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 LMO1P25800 156 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 PSMD7P51665 324 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 DLX1P56177 255 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 P2RX3P56373 397 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 AESQ08117 197 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF273Q14593 569 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 P2RY14Q15391 338 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 RAB11BQ15907 218 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 KRBOX4Q5JUW0 171 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 C1orf100Q5SVJ3 147 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 OR10K2Q6IF99 312 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 CD200R1LQ6Q8B3 271 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 BRD3OSQ6XYD6 125 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 LYPD6Q86Y78 171 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 KIR3DL3Q8N743 410 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 Q8NFD4 153 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 OR6M1Q8NGM8 313 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 OR51E2Q9H255 320 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 GHRLQ9UBU3 117 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF69Q9UC07 566 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 V9GY05 133 aa9.42□□□□□ -0.9
CCDC88C-212ENST00000556767 TRAV1-2A0A0B4J238 106 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 TRAV24A0A0B4J272 114 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PRD5 423 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PRF3 423 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 A0A1W2PRM7 423 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 SMIM30A4D0T7 59 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 M0R1W7 72 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 FSHBP01225 129 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 GADD45AP24522 165 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 GLIPR1P48060 266 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 MEF2CQ06413 473 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 MPV17LQ2QL34 196 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 NHLRC3Q5JS37 347 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 HES5Q5TA89 166 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 RUSC1-AS1Q66K80 236 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 RBMS3Q6XE24 437 aaKnown RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 LINC00596Q86U02 117 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 PRIMA1Q86XR5 153 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 BCL6BQ8N143 479 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 Q8N7P7 452 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 SUMF2Q8NBJ7 301 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 TMEM104Q8NE00 496 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 MRPS24Q96EL2 167 aaKnown RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 C1orf147Q96MC9 270 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 GFI1Q99684 422 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 SLC6A7Q99884 636 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 DPCDQ9BVM2 203 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 BARHL1Q9BZE3 327 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 KCNK15Q9H427 330 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 METTL8Q9H825 291 aaKnown RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 TXNL4BQ9NX01 149 aaKnown RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF581Q9P0T4 197 aa9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 NSD1Q96L73 2696 aaPredicted RBP9.41□□□□□ -0.9
CCDC88C-212ENST00000556767 C2CD3Q4AC94 2353 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 MEIKINA0A087WXM9 373 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 TRGV10A0A0A0MS01 117 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 IGHV1-69DA0A0B4J2H0 117 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 CENPVL3A0A0U1RRI6 287 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 SHISA3A0PJX4 238 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 SLC17A2O00624 439 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 SLC22A1O15245 554 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 BPNT1O95861 308 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 IGHV1-69P01742 117 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF728P0DKX0 622 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 VSIG8P0DPA2 414 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ARSBP15848 533 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 RAB3BP20337 219 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 COX7A1P24310 79 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ERP29P30040 261 aaKnown RBP9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 FGF9P31371 208 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 CLDN12P56749 244 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 OR10A3P58181 314 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ERVFRD-1P60508 538 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 KLRD1Q13241 179 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 NKAPLQ5M9Q1 402 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 NCR3LG1Q68D85 454 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 BRICD5Q6PL45 260 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF782Q6ZMW2 699 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 C1orf122Q6ZSJ8 110 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 KCNG3Q8TAE7 436 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF418Q8TF45 676 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 KCTD7Q96MP8 289 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ZNF714Q96N38 554 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 TMEM59Q9BXS4 323 aa9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 SOX21Q9Y651 276 aaPredicted RBP9.4□□□□□ -0.9
CCDC88C-212ENST00000556767 ODAMA1E959 279 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms