RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MFSD4AQ8N468 514 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 SPICQ8N5J4 248 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 SUMF2Q8NBJ7 301 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 PPP1R35Q8TAP8 253 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 PHF21AQ96BD5 680 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 C1orf159Q96HA4 380 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 ARHGAP5-AS1Q96IT6 56 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 NEDD4LQ96PU5 975 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 ABHD1Q96SE0 405 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 FOXC2Q99958 501 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 RIMS4Q9H426 269 aaPredicted RBP7.98□□□□□ -1.13
LIMA1-211ENST00000552338 AUNIPQ9H7T9 357 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 SCPEP1Q9HB40 452 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 PATZ1Q9HBE1 687 aaKnown RBP7.98□□□□□ -1.13
LIMA1-211ENST00000552338 PLEKHJ1Q9NW61 149 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 MALRD1Q5VYJ5 2156 aa7.98□□□□□ -1.13
LIMA1-211ENST00000552338 A0A096LNT2 108 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 TMEM82A0PJX8 343 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 FABP12A6NFH5 140 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 A8MXK9 166 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 FAM25AB3EWG3 89 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 FAM25CB3EWG5 89 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 FAM25GB3EWG6 89 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 MCRIP1C9JLW8 97 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 C3orf80F5H4A9 247 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 GABARAPH6UMI1 98 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 H7C1Q1 480 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 MGST3O14880 152 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SSX4O60224 188 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 FCN3O75636 299 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 TK1P04183 234 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SLC25A16P16260 332 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 NAT1P18440 290 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 PPP5CP53041 499 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 IL13RA1P78552 427 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 HOXA4Q00056 320 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 COL10A1Q03692 680 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 IKZF1Q13422 519 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 CDNFQ49AH0 187 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SPANXN2Q5MJ10 180 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 TMEM69Q5SWH9 247 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SFRP4Q6FHJ7 346 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SLC35E4Q6ICL7 350 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 KRTAP1-3Q8IUG1 177 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF525Q8N782 197 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 GDPD1Q8N9F7 314 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 C8orf46Q8TAG6 207 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 GPX8Q8TED1 209 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 DEDD2Q8WXF8 326 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 FAM168AQ92567 244 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 CORO2AQ92828 525 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SDHCQ99643 169 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SULT4A1Q9BR01 284 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 OCSTAMPQ9BR26 566 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 DPCDQ9BVM2 203 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 SRRQ9GZT4 340 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 MBNL3Q9NUK0 354 aaKnown RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF581Q9P0T4 197 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 ZNF107Q9UII5 783 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 RBMX2Q9Y388 322 aaKnown RBP7.97□□□□□ -1.13
LIMA1-211ENST00000552338 CRYBG3Q68DQ2 2970 aa7.97□□□□□ -1.13
LIMA1-211ENST00000552338 LRBAP50851 2863 aa7.96□□□□□ -1.13
LIMA1-211ENST00000552338 TRAV18A0A075B6X5 111 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CEACAM18A8MTB9 384 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 PPIHO43447 177 aaKnown RBP7.96□□□□□ -1.14
LIMA1-211ENST00000552338 DIRAS3O95661 229 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 GYPAP02724 150 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CGB3P0DN86 165 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CGB7P0DN87 165 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 ZNF44P15621 663 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 DTYMKP23919 212 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 GABRR1P24046 479 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 DUSP1P28562 367 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CBX5P45973 191 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 OR3A1P47881 315 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 LMO4P61968 165 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 RSBN1Q5VWQ0 802 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CLEC2AQ6UVW9 174 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 ZNF497Q6ZNH5 498 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 C6orf201Q7Z4U5 140 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 OR4S1Q8NGB4 309 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 OR5T2Q8NGG2 359 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 SMIM4Q8WVI0 70 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 NEIL1Q96FI4 390 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-211ENST00000552338 PIMREGQ9BSJ6 248 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 FAAP24Q9BTP7 215 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CCDC32Q9BV29 185 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 WDR12Q9GZL7 423 aaKnown RBP7.96□□□□□ -1.14
LIMA1-211ENST00000552338 BPESC1Q9GZL8 116 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CHST6Q9GZX3 395 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 LINC00574Q9H8X3 128 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 CTSZQ9UBR2 303 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 OPN4Q9UHM6 478 aa7.96□□□□□ -1.14
LIMA1-211ENST00000552338 APCP25054 2843 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 ANKRD17O75179 2603 aaKnown RBP7.95□□□□□ -1.14
LIMA1-211ENST00000552338 CELSR2Q9HCU4 2923 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 IGHV3OR15-7A0A075B7D8 119 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 A0A0G2JMP0 313 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 A0A0X1KG70 313 aa7.95□□□□□ -1.14
LIMA1-211ENST00000552338 FUOMA2VDF0 154 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms