RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SCOCQ9UIL1 159 aa14.01□□□□□ -0.17
CLSTN3-214ENST00000542663 GSTK1Q9Y2Q3 226 aa14.01□□□□□ -0.17
CLSTN3-214ENST00000542663 LYSTQ99698 3801 aa14.01□□□□□ -0.17
CLSTN3-214ENST00000542663 IGKV1-12A0A0C4DH73 117 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 SH2D1BO14796 132 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 FGF16O43320 207 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 IGKV1D-12P01611 117 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 ATP1B3P54709 279 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 GP2P55259 537 aaKnown RBP14□□□□□ -0.17
CLSTN3-214ENST00000542663 RAB25P57735 213 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 KLHL22Q53GT1 634 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 AADACL4Q5VUY2 407 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 NXNL2Q5VZ03 156 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 PRSS35Q8N3Z0 413 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 STPG2Q8N412 459 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 DRAM1Q8N682 238 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 OR4D6Q8NGJ1 314 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 OR9G1Q8NH87 305 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 MUC7Q8TAX7 377 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 TOMM40LQ969M1 308 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 RPEQ96AT9 228 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 CCDC124Q96CT7 223 aaKnown RBP14□□□□□ -0.17
CLSTN3-214ENST00000542663 KIRREL1Q96J84 757 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 LRGUKQ96M69 825 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 TBX5Q99593 518 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 PPIL3Q9H2H8 161 aaKnown RBP14□□□□□ -0.17
CLSTN3-214ENST00000542663 DCLRE1BQ9H816 532 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 GAR1Q9NY12 217 aaKnown RBP14□□□□□ -0.17
CLSTN3-214ENST00000542663 ARL2BPQ9Y2Y0 163 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 SORL1Q92673 2214 aa14□□□□□ -0.17
CLSTN3-214ENST00000542663 FUOMA2VDF0 154 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 ZNF729A6NN14 1252 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 SERPINA3P01011 423 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 RPLP1P05386 114 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 CSN2P05814 226 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 CGB3P0DN86 165 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 CGB7P0DN87 165 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 TMEM11P17152 192 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 NFYBP25208 207 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 MNAT1P51948 309 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 MTCP1P56278 107 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 SLC35B1P78383 322 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 C9orf66Q5T8R8 295 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 LCNL1Q6ZST4 164 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 SLC35E3Q7Z769 313 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 CCDC54Q8NEL0 328 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 ADAT3Q96EY9 351 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 COMMD4Q9H0A8 199 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 ING3Q9NXR8 418 aa13.99□□□□□ -0.17
CLSTN3-214ENST00000542663 LOC107986453A0A1B0GWG9 222 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 DCTN3O75935 186 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 CYB5AP00167 134 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 KRT8P05787 483 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 CHATP28329 748 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 ECI1P42126 302 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 KIR3DL2P43630 455 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 PDZK1IP1Q13113 114 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 HES1Q14469 280 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 HNF4GQ14541 408 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 KRBOX4Q5JUW0 171 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 Q6P435 159 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 RDH10Q8IZV5 341 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 TCEANCQ8N8B7 351 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 OR5M8Q8NGP6 311 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 PP6455Q8WZ26 134 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 LEAP2Q969E1 77 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 RNF166Q96A37 237 aaPredicted RBP13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 RFT1Q96AA3 541 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 C10orf35Q96D05 121 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 PCDHB16Q9NRJ7 776 aa13.98□□□□□ -0.17
CLSTN3-214ENST00000542663 KBTBD11-OT1A0A1B0GTJ5 212 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 A0A1W2PQL4 384 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 J3QR06 171 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 SLC33A1O00400 549 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 KDM4BO94953 1096 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 IGHV3-7P01780 117 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 ATF1P18846 271 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 EPHA2P29317 976 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 DAPP51397 102 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 ATXN7L3Q14CW9 347 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 FAHD1Q6P587 224 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 FOXRED2Q8IWF2 684 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 OR8U1Q8NH10 309 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 TMEM163Q8TC26 289 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 ADI1Q9BV57 179 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 H2AFY2Q9P0M6 372 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 AMMECR1Q9Y4X0 333 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 CSMD3Q7Z407 3707 aa13.97□□□□□ -0.17
CLSTN3-214ENST00000542663 METTL15A6NJ78 407 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 AQP12BA6NM10 295 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 SEC14L6B5MCN3 397 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 IGKV1D-33P01593 117 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 IGKV1-33P01594 117 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 ZNF44P15621 663 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 SCN1BQ07699 218 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 KIR2DS1Q14954 304 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 TEX38Q6PEX7 206 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 LHFPL2Q6ZUX7 228 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 UTS2BQ765I0 119 aa13.96□□□□□ -0.17
CLSTN3-214ENST00000542663 AQP12AQ8IXF9 295 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms