RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 NAPSAO96009 420 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 HOXA1P49639 335 aaPredicted RBP13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 FGF12P61328 243 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 CEACAM21Q3KPI0 293 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 MIDNQ504T8 468 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 DPPA2Q7Z7J5 298 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 PARP12Q9H0J9 701 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 Q9N2K0 584 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 SMCO4Q9NRQ5 59 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 STRAPQ9Y3F4 350 aaKnown RBP13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 FREM1Q5H8C1 2179 aa13.79□□□□□ -0.2
CHMP1A-202ENST00000535997 F10P00742 488 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 CRYBA1P05813 215 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 PAX6P26367 422 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 HAAOP46952 286 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 RND3P61587 244 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 PRDX4Q13162 271 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 AVPI1Q5T686 147 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 SECTM1Q8WVN6 248 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 THOC3Q96J01 351 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 TAAR9Q96RI9 348 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 TRDCB7Z8K6 153 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 BCL3P20749 454 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 CCNOP22674 350 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 CAMLGP49069 296 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 LHX2P50458 406 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 ZNF616Q08AN1 781 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 MEX3BQ6ZN04 569 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 KDF1Q8NAX2 398 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 OR2M7Q8NG81 312 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 RXFP4Q8TDU9 374 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 APOBEC3DQ96AK3 386 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 SCRT1Q9BWW7 348 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 BIN3Q9NQY0 253 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 B4GALT7Q9UBV7 327 aa13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 RCL1Q9Y2P8 373 aaKnown RBP13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 UBE2J1Q9Y385 318 aaPredicted RBP13.78□□□□□ -0.2
CHMP1A-202ENST00000535997 FREM2Q5SZK8 3169 aa13.77□□□□□ -0.2
CHMP1A-202ENST00000535997 C5orf49A4QMS7 147 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 COLCA2A8K830 154 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 NEURL1O76050 574 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 SRYQ05066 204 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 GUK1Q16774 197 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 MPV17LQ2QL34 196 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 MKXQ8IYA7 352 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 OR2C3Q8N628 320 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 SNIP1Q8TAD8 396 aaKnown RBP13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 HPSE2Q8WWQ2 592 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 BOD1Q96IK1 185 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 SPIN2AQ99865 258 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 SPIN2BQ9BPZ2 258 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 SPRY4Q9C004 299 aa13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 ZNF703Q9H7S9 590 aaPredicted RBP13.77□□□□□ -0.21
CHMP1A-202ENST00000535997 A0A096LPE4 126 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 A0A1W2PPZ6 126 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 NKX2-6A6NCS4 301 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 NME2P1O60361 137 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 CTXN2P0C2S0 81 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 PRKACAP17612 351 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 PPT1P50897 306 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 GPM6AP51674 278 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 CLDN18P56856 261 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 DBX2Q6ZNG2 339 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 MRPL21Q7Z2W9 205 aaKnown RBP13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 TBC1D26Q86UD7 250 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 C1orf210Q8IVY1 113 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 ZNF695Q8IW36 515 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 TUSC5Q8IXB3 177 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 ZDHHC23Q8IYP9 409 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 ZNF565Q8N9K5 539 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 SLAMF9Q96A28 289 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 USB1Q9BQ65 265 aaKnown RBP13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 STRADBQ9C0K7 418 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 C19orf12Q9NSK7 152 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 KIR2DS1A0A191URI9 304 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 HLA-HP01893 362 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 PRH1P02810 166 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 LMO1P25800 156 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 KIR2DS4P43632 304 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 NKX2-1P43699 371 aaPredicted RBP13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 KIR2DS1Q14954 304 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 BATF2Q8N1L9 274 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 OR5A2Q8NGI9 324 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 GTF3AQ92664 365 aaKnown RBP13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 ABHD14BQ96IU4 210 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 PRRG4Q9BZD6 226 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 C11orf1Q9H5F2 150 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 MTCH1Q9NZJ7 389 aa13.76□□□□□ -0.21
CHMP1A-202ENST00000535997 DUXBA0A1W2PPF3 345 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 SYNGR4O95473 234 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 SCTP09683 121 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 FHITP49789 147 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 EWSR1Q01844 656 aaKnown RBP eCLIP13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 ZNF266Q14584 549 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 SPIN3Q5JUX0 258 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 ABHD17BQ5VST6 288 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 C15orf54Q8N8G6 183 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 DDA1Q9BW61 102 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 EGLN1Q9GZT9 426 aa13.75□□□□□ -0.21
CHMP1A-202ENST00000535997 EIF5A2Q9GZV4 153 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms