RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SURF2Q15527 256 aaPredicted RBP11.13□□□□□ -0.63
USP53-209ENST00000514665 UBAC2Q8NBM4 344 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 ACY3Q96HD9 319 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 RSRP1Q9BUV0 290 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 NEUROG3Q9Y4Z2 214 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 LIPGQ9Y5X9 500 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 GREB1Q4ZG55 1949 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 TRBV5-5A0A0J9YX44 114 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 TSPAN2O60636 221 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 RTL8BQ17RB0 113 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 FAM209AQ5JX71 171 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 BTNL8Q6UX41 500 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 ZNF66Q6ZN08 573 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 GAPTQ8N292 157 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 OR10D4PQ8NGN7 298 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 MAFAQ8NHW3 353 aaPredicted RBP11.13□□□□□ -0.63
USP53-209ENST00000514665 CT55Q8WUE5 264 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 NMES1Q9C002 83 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 TOLLIPQ9H0E2 274 aa11.13□□□□□ -0.63
USP53-209ENST00000514665 IGKV1D-42A0A075B6H8 117 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 TRAF3IP2O43734 574 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 ZNF17P17021 662 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 PLPPR5Q32ZL2 321 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 FFAR4Q5NUL3 377 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 FHL5Q5TD97 284 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 LINC01590Q5TEZ4 76 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 Q8IYB0 196 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 TAAR6Q96RI8 345 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 GPX7Q96SL4 187 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 ALX4Q9H161 411 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 ZDHHC11Q9H8X9 412 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 TRAV17A0A0B4J275 112 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 C3orf80F5H4A9 247 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 CDIPTO14735 213 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 RAB13P51153 203 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 DMWDQ09019 674 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 AWAT1Q58HT5 328 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 CHST5Q9GZS9 411 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 AICDAQ9GZX7 198 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 OR2D2Q9H210 308 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 TNFSF18Q9UNG2 199 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 TBX6O95947 436 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 OPN1MWP04001 364 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 OPN1MW2P0DN77 364 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 OPN1MW3P0DN78 364 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 RCC1P18754 421 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 VDAC1P21796 283 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 MAGEA5P43359 124 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 NOVA1P51513 510 aaKnown RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 ERHP84090 104 aaKnown RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.12□□□□□ -0.63
USP53-209ENST00000514665 S100A7AQ86SG5 101 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 LYG1Q8N1E2 194 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 PKDREJQ9NTG1 2253 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 PLXNA1Q9UIW2 1896 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 LCTP09848 1927 aa11.12□□□□□ -0.63
USP53-209ENST00000514665 IGLV1-36A0A0B4J1U3 117 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 EPOPA6NHQ4 379 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 CLDN34H7C241 214 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 DYNLT3P51808 116 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 C19orf57Q0VDD7 668 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 OR5B3Q8NH48 314 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 CORO2AQ92828 525 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 FAM103A1Q9BTL3 118 aaKnown RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 UCK1Q9HA47 277 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 BRCA1P38398 1863 aaKnown RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 A0A1W2PPH5 198 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 C20orf202A1L168 122 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 NKX2-6A6NCS4 301 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 FABP4P15090 132 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 GNG10P50151 68 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 TAS2R45P59539 299 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 ZNF362Q5T0B9 420 aaPredicted RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 SLC16A13Q7RTY0 426 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 OR10AD1Q8NGE0 317 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 OR13G1Q8NGZ3 307 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 FBXO17Q96EF6 278 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 STARD10Q9Y365 291 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 TRGV10A0A0A0MS01 117 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 OR5B21A6NL26 309 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 CD1AP06126 327 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 LIFP15018 202 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 RPS4Y1P22090 263 aaKnown RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 PPP1CBP62140 327 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 ROM1Q03395 351 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 SPEM2Q0P670 501 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 DBX2Q6ZNG2 339 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 RGP1Q92546 391 aaPredicted RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 LPAR5Q9H1C0 372 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 ZNF107Q9UII5 783 aaPredicted RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 TINAGQ9UJW2 476 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 C7orf77A4D0Y5 90 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 SPINK4O60575 86 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 MNX1P50219 401 aaPredicted RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 H2BFSP57053 126 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 ZNF154Q13106 437 aa11.11□□□□□ -0.63
USP53-209ENST00000514665 ZNF660Q6AZW8 331 aaPredicted RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 SF3B5Q9BWJ5 86 aaKnown RBP11.11□□□□□ -0.63
USP53-209ENST00000514665 OR2H1Q9GZK4 316 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms