RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 RBM11P57052 281 aaKnown RBP16.74■□□□□ 0.27
USP53-208ENST00000514305 NCS1P62166 190 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 IKZF1Q13422 519 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 CTF1Q16619 201 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 SLC16A12Q6ZSM3 486 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 ASCC1Q8N9N2 400 aaKnown RBP16.74■□□□□ 0.27
USP53-208ENST00000514305 AP3S1Q92572 193 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 SLC25A28Q96A46 364 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 PTX4Q96A99 478 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 SELENOIQ9C0D9 397 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 LIN7BQ9HAP6 207 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 ABRACLQ9P1F3 81 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 SLC25A10Q9UBX3 287 aaPredicted RBP16.74■□□□□ 0.27
USP53-208ENST00000514305 FBLN5Q9UBX5 448 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 OR5V1Q9UGF6 321 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 ZNF222Q9UK12 451 aa16.74■□□□□ 0.27
USP53-208ENST00000514305 METTL21EPA6NDL7 271 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 FAM157AC9JC47 383 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 OR7C1O76099 320 aaPredicted RBP16.73■□□□□ 0.27
USP53-208ENST00000514305 VSIG8P0DPA2 414 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 GABRR1P24046 479 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 KCNJ3P48549 501 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 CAV3P56539 151 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 COL10A1Q03692 680 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 SCN1BQ07699 218 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 HNRNPA0Q13151 305 aaKnown RBP16.73■□□□□ 0.27
USP53-208ENST00000514305 P2RY14Q15391 338 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 IDNKQ5T6J7 187 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 WDR25Q64LD2 544 aaPredicted RBP16.73■□□□□ 0.27
USP53-208ENST00000514305 LYPD2Q6UXB3 125 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 TMEM185AQ8NFB2 350 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 SLC25A46Q96AG3 418 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 GAFA1Q96PS6 74 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 NAA50Q9GZZ1 169 aaKnown RBP16.73■□□□□ 0.27
USP53-208ENST00000514305 DCSTAMPQ9H295 470 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 IFT22Q9H7X7 185 aa16.73■□□□□ 0.27
USP53-208ENST00000514305 TMEM14DPA8MWL7 114 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 A8MXK9 166 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 ZNF701M0R085 212 aaPredicted RBP16.72■□□□□ 0.27
USP53-208ENST00000514305 DVL1O14640 695 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 SCGNO76038 276 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 OR2H2O95918 312 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 NDUFB7P17568 137 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 RAB6AP20340 208 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 LMO1P25800 156 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 RBMXP38159 391 aaKnown RBP16.72■□□□□ 0.27
USP53-208ENST00000514305 RPS19P39019 145 aaKnown RBP16.72■□□□□ 0.27
USP53-208ENST00000514305 HOXA4Q00056 320 aaPredicted RBP16.72■□□□□ 0.27
USP53-208ENST00000514305 RBM39Q14498 530 aaKnown RBP16.72■□□□□ 0.27
USP53-208ENST00000514305 GDPD3Q7L5L3 318 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 CD177Q8N6Q3 437 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 ACOT12Q8WYK0 555 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 ST8SIA4Q92187 359 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 ISOC1Q96CN7 298 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 DMRTB1Q96MA1 342 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 BANF2Q9H503 90 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 ETV7Q9Y603 341 aa16.72■□□□□ 0.27
USP53-208ENST00000514305 TRAV20A0A0B4J274 112 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 A0A0G2JK05 382 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 A0A1W2PPH5 198 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 K7N7A8 449 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 TK1P04183 234 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 GLAP06280 429 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 LIPFP07098 398 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 CLEC2LP0C7M8 214 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 GATA3P23771 443 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 DUSP1P28562 367 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 CLDN12P56749 244 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 RPS27AP62979 156 aaKnown RBP16.71■□□□□ 0.27
USP53-208ENST00000514305 DYNC1I2Q13409 638 aaKnown RBP16.71■□□□□ 0.27
USP53-208ENST00000514305 MZT2AQ6P582 158 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 TEX29Q8N6K0 151 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 OR56B1Q8NGI3 324 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 FAM46BQ96A09 425 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 PHF21AQ96BD5 680 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 C1orf147Q96MC9 270 aaPredicted RBP16.71■□□□□ 0.27
USP53-208ENST00000514305 NEDD4LQ96PU5 975 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 BARHL1Q9BZE3 327 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 RSL24D1Q9UHA3 163 aaKnown RBP16.71■□□□□ 0.27
USP53-208ENST00000514305 MAB21L2Q9Y586 359 aa16.71■□□□□ 0.27
USP53-208ENST00000514305 LOC105371242A0A075B767 164 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 A0A0A6YYJ9 748 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 PPIAL4CA0A0B4J2A2 164 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 SMIM30A4D0T7 59 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 MCRIP1C9JLW8 97 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 SIRPB1O00241 398 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 MGST3O14880 152 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 GEMIN2O14893 280 aaKnown RBP16.7■□□□□ 0.26
USP53-208ENST00000514305 ARL6IP1Q15041 203 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 TAF9Q16594 264 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 PIGYQ3MUY2 71 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 ATAD3CQ5T2N8 411 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 FAHD2BQ6P2I3 314 aaPredicted RBP16.7■□□□□ 0.26
USP53-208ENST00000514305 BTNL3Q6UXE8 466 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 ZNF841Q6ZN19 808 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 OR8H2Q8N162 312 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 FAM216BQ8N7L0 139 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 ZNRF1Q8ND25 227 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 TMEM104Q8NE00 496 aa16.7■□□□□ 0.26
USP53-208ENST00000514305 FAHD2AQ96GK7 314 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms