RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 BEND4Q6ZU67 534 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 CSNK2A3Q8NEV1 391 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 S100A13Q99584 98 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 SFXN3Q9BWM7 321 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 TMEM231Q9H6L2 316 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 ZC4H2Q9NQZ6 224 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 SHPKQ9UHJ6 478 aa10.4□□□□□ -0.74
HDAC6-230ENST00000488543 A8MXE2 369 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 GPR31O00270 319 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 SMPD2O60906 423 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 PNLIPRP3Q17RR3 467 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 TMEM88Q6PEY1 159 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 CALHM1Q8IU99 346 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 ST6GALNAC3Q8NDV1 305 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 OR4K15Q8NH41 348 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 DCUN1D4Q92564 292 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 PRRT1Q99946 306 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 PECRQ9BY49 303 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 IL36GQ9NZH8 169 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 PCDHB10Q9UN67 800 aa10.4□□□□□ -0.75
HDAC6-230ENST00000488543 CADP27708 2225 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 A0A0D9SG52 128 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 MSGN1A6NI15 193 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 IGKV3-15P01624 115 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 IFNA6P05013 189 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 RSU1Q15404 277 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 ZDHHC23Q8IYP9 409 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 OR5L1Q8NGL2 311 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 MITD1Q8WV92 249 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 PHB2Q99623 299 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 SLC25A32Q9H2D1 315 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 ZNF581Q9P0T4 197 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 H0YIZ8 118 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 J3QW42 95 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 TOR1AO14656 332 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 CPT2P23786 658 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 BLVRBP30043 206 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-230ENST00000488543 MEF2DQ14814 521 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 P2RY6Q15077 328 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 CEACAM21Q3KPI0 293 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 SPATA46Q5T0L3 261 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 FBXW12Q6X9E4 464 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 ACOT7LQ6ZUV0 252 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 BHLHA15Q7RTS1 189 aaPredicted RBP10.39□□□□□ -0.75
HDAC6-230ENST00000488543 FOXRED2Q8IWF2 684 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 C17orf78Q8N4C9 275 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 S100PBPQ96BU1 408 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 CDH20Q9HBT6 801 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 MEMO1Q9Y316 297 aa10.39□□□□□ -0.75
HDAC6-230ENST00000488543 ZNF205O95201 554 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 SFTPBP07988 381 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 CTRB1P17538 263 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 OPRM1P35372 400 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 ERVS71-1P61550 626 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 SNTB1Q13884 538 aaKnown RBP10.38□□□□□ -0.75
HDAC6-230ENST00000488543 EIF2S3LQ2VIR3 472 aaKnown RBP10.38□□□□□ -0.75
HDAC6-230ENST00000488543 CTRB2Q6GPI1 263 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 THAP6Q8TBB0 222 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 TMED6Q8WW62 240 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 TMEM230Q96A57 120 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 ST6GALNAC5Q9BVH7 336 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 ESPL1Q14674 2120 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 TSPAN9O75954 239 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 IGLV1-44P01699 117 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 PPP1CBP62140 327 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 DAZAP2Q15038 168 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-230ENST00000488543 GUCA2BQ16661 112 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 OR2T2Q6IF00 324 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 ZNF611Q8N823 705 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 ZSCAN4Q8NAM6 433 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-230ENST00000488543 OR51F2Q8NH61 342 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 OR5P3Q8WZ94 311 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 RND1Q92730 232 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 VKORC1Q9BQB6 163 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 OCSTAMPQ9BR26 566 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 C5orf66Q9H5L9 145 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 CHMP1AQ9HD42 196 aaPredicted RBP10.38□□□□□ -0.75
HDAC6-230ENST00000488543 OR5AC2Q9NZP5 309 aa10.38□□□□□ -0.75
HDAC6-230ENST00000488543 CCL21O00585 134 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 MSTNO14793 375 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 BET1O15155 118 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 OR2F2O95006 317 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 ADCYAP1P18509 176 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 IL32P24001 234 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 GABRR1P24046 479 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 MPZP25189 248 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 CA7P43166 264 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 GPM6AP51674 278 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 FGL1Q08830 312 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 OR2F1Q13607 317 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 SLC25A26Q70HW3 274 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 INO80EQ8NBZ0 244 aaPredicted RBP10.37□□□□□ -0.75
HDAC6-230ENST00000488543 Q8NFD4 153 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 MYOZ1Q9NP98 299 aaPredicted RBP10.37□□□□□ -0.75
HDAC6-230ENST00000488543 SLC2A8Q9NY64 477 aa10.37□□□□□ -0.75
HDAC6-230ENST00000488543 OR5H1A6NKK0 313 aa10.36□□□□□ -0.75
HDAC6-230ENST00000488543 ZNF732B4DXR9 585 aa10.36□□□□□ -0.75
HDAC6-230ENST00000488543 CA11O75493 328 aa10.36□□□□□ -0.75
HDAC6-230ENST00000488543 CSTBP04080 98 aaKnown RBP10.36□□□□□ -0.75
HDAC6-230ENST00000488543 CECR9P0C854 216 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms