RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 HRASLS5Q96KN8 279 aa13.48□□□□□ -0.25
VIM-204ENST00000478746 PLEKHA1Q9HB21 404 aa13.48□□□□□ -0.25
VIM-204ENST00000478746 SNX5Q9Y5X3 404 aa13.48□□□□□ -0.25
VIM-204ENST00000478746 SIRT4Q9Y6E7 314 aaPredicted RBP13.48□□□□□ -0.25
VIM-204ENST00000478746 A0A087X0M5 115 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 TRBV2A0A0J9YWF9 115 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 A0A1B0GX30 115 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 SH2D1BO14796 132 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 MAGEB4O15481 346 aaPredicted RBP13.47□□□□□ -0.25
VIM-204ENST00000478746 ENTPD6O75354 484 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 CST1P01037 141 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 PRKACAP17612 351 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 BCL3P20749 454 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 NFYBP25208 207 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 PTGFRP43088 359 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 ZNF322Q6U7Q0 402 aaPredicted RBP13.47□□□□□ -0.25
VIM-204ENST00000478746 OR9G1Q8NH87 305 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 TEX12Q9BXU0 123 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 GON7Q9BXV9 100 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 ZMAT4Q9H898 229 aa13.47□□□□□ -0.25
VIM-204ENST00000478746 H3BSH0 61 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 AP4M1O00189 453 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 GATBO75879 557 aaKnown RBP13.46□□□□□ -0.25
VIM-204ENST00000478746 CYB5AP00167 134 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 SERPINA3P01011 423 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 RAP2AP10114 183 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 OSMP13725 252 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 CXCR4P61073 352 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 GPR50Q13585 617 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 ODF4Q2M2E3 257 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 SPIN3Q5JUX0 258 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 UTF1Q5T230 341 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 PLEKHG7Q6ZR37 379 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 OVCH2Q7RTZ1 564 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 CITED4Q96RK1 184 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 THTPAQ9BU02 230 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 ZNF556Q9HAH1 456 aa13.46□□□□□ -0.25
VIM-204ENST00000478746 AMMECR1Q9Y4X0 333 aaPredicted RBP13.46□□□□□ -0.25
VIM-204ENST00000478746 ODAMA1E959 279 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 CCDC182A6NF36 153 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 OR2H2O95918 312 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 CCL1P22362 96 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 INSL3P51460 131 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 ATP1B3P54709 279 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 FOXE3Q13461 319 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 TRIM25Q14258 630 aaKnown RBP13.45□□□□□ -0.26
VIM-204ENST00000478746 TMEM236Q5W0B7 351 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 EXOSC4Q9NPD3 245 aaKnown RBP13.45□□□□□ -0.26
VIM-204ENST00000478746 ING3Q9NXR8 418 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 GSTK1Q9Y2Q3 226 aa13.45□□□□□ -0.26
VIM-204ENST00000478746 A0A1W2PPI3 338 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 ZNF729A6NN14 1252 aaPredicted RBP13.44□□□□□ -0.26
VIM-204ENST00000478746 J3QR06 171 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 CCRL2O00421 344 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 GNGT2O14610 69 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 SYT7O43581 403 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 IGKV1D-33P01593 117 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 IGKV1-33P01594 117 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 ELANEP08246 267 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 POU3F4P49335 361 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 RBP2P50120 134 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 MS4A2Q01362 244 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 KRBOX4Q5JUW0 171 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 TMEM179BQ7Z7N9 219 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 CNN2Q99439 309 aaKnown RBP13.44□□□□□ -0.26
VIM-204ENST00000478746 ADI1Q9BV57 179 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 HMG20AQ9NP66 347 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 TVP23BQ9NYZ1 205 aa13.44□□□□□ -0.26
VIM-204ENST00000478746 NCBP2LA6PVI3 153 aaKnown RBP13.43□□□□□ -0.26
VIM-204ENST00000478746 RPP14O95059 124 aaKnown RBP13.43□□□□□ -0.26
VIM-204ENST00000478746 IGHV3-7P01780 117 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 RAB7AP51149 207 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 SCN1BQ07699 218 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 MADCAM1Q13477 382 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 DIAPH2-AS1Q14236 149 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 ZSCAN26Q16670 478 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 C17orf58Q2M2W7 97 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 FAM27D1Q5T7N8 215 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 OR8H3Q8N146 312 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 RNF152Q8N8N0 203 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 KIRREL1Q96J84 757 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 LRGUKQ96M69 825 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 CHST5Q9GZS9 411 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 SLC25A19Q9HC21 320 aa13.43□□□□□ -0.26
VIM-204ENST00000478746 MRM2Q9UI43 246 aaKnown RBP13.43□□□□□ -0.26
VIM-204ENST00000478746 KBTBD11-OT1A0A1B0GTJ5 212 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 ZNF670-ZNF695F2Z2N8 137 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 FRMD6-AS1P0C7T7 363 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 GPR12P47775 334 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 MTCP1P56278 107 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 ADAMTSL5Q6ZMM2 481 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 SLC35F2Q8IXU6 374 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 DNAAF1Q8NEP3 725 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 OR11H1Q8NG94 326 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 HAVCR2Q8TDQ0 301 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 C4orf3Q8WVX3 66 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 LEAP2Q969E1 77 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 CCDC124Q96CT7 223 aaKnown RBP13.42□□□□□ -0.26
VIM-204ENST00000478746 MNTQ99583 582 aa13.42□□□□□ -0.26
VIM-204ENST00000478746 KRTAP17-1Q9BYP8 105 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms