RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 MRPS24Q96EL2 167 aaKnown RBP12.24□□□□□ -0.45
COL9A3-209ENST00000469852 SNX22Q96L94 193 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 BCL7BQ9BQE9 202 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 TM2D1Q9BX74 207 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 PCDHB16Q9NRJ7 776 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 FBLN5Q9UBX5 448 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 DSCAML1Q8TD84 2053 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 MEX3AA1L020 520 aaKnown RBP12.23□□□□□ -0.45
COL9A3-209ENST00000469852 CCDC160A6NGH7 325 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 FOXI3A8MTJ6 420 aaPredicted RBP12.23□□□□□ -0.45
COL9A3-209ENST00000469852 B4DSR2 109 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 SOCS1O15524 211 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 MSMBP08118 114 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 GZMKP49863 264 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 NPY4RP50391 375 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 LRRC10Q5BKY1 277 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 CYB5R2Q6BCY4 276 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 OR8H2Q8N162 312 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 SUMF2Q8NBJ7 301 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 PLPPR1Q8TBJ4 325 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 H1FXQ92522 213 aaKnown RBP12.23□□□□□ -0.45
COL9A3-209ENST00000469852 GSX1Q9H4S2 264 aaPredicted RBP12.23□□□□□ -0.45
COL9A3-209ENST00000469852 IFT22Q9H7X7 185 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 RCC2Q9P258 522 aaKnown RBP12.23□□□□□ -0.45
COL9A3-209ENST00000469852 GLS2Q9UI32 602 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 POLR3KQ9Y2Y1 108 aaPredicted RBP12.23□□□□□ -0.45
COL9A3-209ENST00000469852 NAV3Q8IVL0 2385 aa12.23□□□□□ -0.45
COL9A3-209ENST00000469852 LOC105371242A0A075B767 164 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 FOXH1O75593 365 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 LY6G6DO95868 133 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 TGFAP01135 160 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 CPT2P23786 658 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 EDDM3AQ14507 147 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 ATXN7L3Q14CW9 347 aaPredicted RBP12.22□□□□□ -0.45
COL9A3-209ENST00000469852 GRK1Q15835 563 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 MPV17LQ2QL34 196 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 MOGAT2Q3SYC2 334 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 PAN3Q58A45 887 aaKnown RBP12.22□□□□□ -0.45
COL9A3-209ENST00000469852 ATAD3CQ5T2N8 411 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 LINC00596Q86U02 117 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 FAM89BQ8N5H3 189 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 CHST4Q8NCG5 386 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 OR4M1Q8NGD0 313 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 DYNC2LI1Q8TCX1 351 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 DYRK2Q92630 601 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 SLC25A38Q96DW6 304 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 COQ2Q96H96 371 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 DCTN5Q9BTE1 182 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 DPCDQ9BVM2 203 aaPredicted RBP12.22□□□□□ -0.45
COL9A3-209ENST00000469852 FAM234AQ9H0X4 552 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 C19orf12Q9NSK7 152 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 ING3Q9NXR8 418 aa12.22□□□□□ -0.45
COL9A3-209ENST00000469852 WNK2Q9Y3S1 2297 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A10PA6NDY2 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A18PA6NE21 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A16PA6NEW6 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A20PA6NIJ5 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A8PA6NJQ4 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A7PA6NKC0 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A22PA8MWA6 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A12PA8MX19 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A5PA8MXJ8 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A23PA8MXZ1 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 CD5LO43866 347 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 NOL3O60936 208 aaKnown RBP12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A15PP0C7V4 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A13PP0C7W8 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A14PP0C7W9 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FAM90A24PP0C7X0 464 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 FOSL1P15407 271 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 RAB6AP20340 208 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 CHATP28329 748 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 VEGFCP49767 419 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 TMEM50BP56557 158 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 AESQ08117 197 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 RAB12Q6IQ22 244 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 TCF23Q7RTU1 214 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 TMEM186Q96B77 213 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 HIF1ANQ9NWT6 349 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 RSL24D1Q9UHA3 163 aaKnown RBP12.21□□□□□ -0.45
COL9A3-209ENST00000469852 RPUSD1Q9UJJ7 312 aaKnown RBP12.21□□□□□ -0.45
COL9A3-209ENST00000469852 RAB22AQ9UL26 194 aa12.21□□□□□ -0.45
COL9A3-209ENST00000469852 IGHV2-70DA0A0C4DH43 119 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 MGST3O14880 152 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 PDCD6O75340 191 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 BLVRBP30043 206 aaPredicted RBP12.2□□□□□ -0.46
COL9A3-209ENST00000469852 GLIPR1P48060 266 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 RORCP51449 518 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 EDDM3BP56851 147 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 PLAC9Q5JTB6 97 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 NKAPLQ5M9Q1 402 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 C6orf201Q7Z4U5 140 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 CROCCP3Q8IVE0 287 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 LY6G5BQ8NDX9 201 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 RAB40AQ8WXH6 277 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 PTX4Q96A99 478 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 SULT4A1Q9BR01 284 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 NUDT16L1Q9BRJ7 211 aaKnown RBP12.2□□□□□ -0.46
COL9A3-209ENST00000469852 URM1Q9BTM9 101 aaKnown RBP12.2□□□□□ -0.46
COL9A3-209ENST00000469852 ABRACLQ9P1F3 81 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms