RNA–Protein interactions for RNA: ENST00000446231.6

SMG1-202, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG1, Length 16,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-202ENST00000446231 TCTN1Q2MV58 587 aa6.97□□□□□ -1.29
SMG1-202ENST00000446231 COX19Q49B96 90 aa6.97□□□□□ -1.29
SMG1-202ENST00000446231 LINC00615Q96LM1 132 aaPredicted RBP6.97□□□□□ -1.29
SMG1-202ENST00000446231 LHX9Q9NQ69 397 aa6.97□□□□□ -1.29
SMG1-202ENST00000446231 MED29Q9NX70 200 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 PLPP3O14495 311 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 BCAT2O15382 392 aaPredicted RBP6.96□□□□□ -1.29
SMG1-202ENST00000446231 EDDM3BP56851 147 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 CDH20Q9HBT6 801 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 RAB9BQ9NP90 201 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 LIN7CQ9NUP9 197 aaKnown RBP6.96□□□□□ -1.29
SMG1-202ENST00000446231 VDAC1P21796 283 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 SYT13Q7L8C5 426 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 ST8SIA1Q92185 356 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 OR7C2O60412 319 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 MPZL1O95297 269 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 CYBAP13498 195 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 Q56UQ5 140 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 DHRS13Q6UX07 377 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 TBC1D26Q86UD7 250 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 ZCCHC14Q8WYQ9 949 aaKnown RBP6.96□□□□□ -1.29
SMG1-202ENST00000446231 PCED1AQ9H1Q7 454 aa6.96□□□□□ -1.29
SMG1-202ENST00000446231 SEBOXQ9HB31 216 aaPredicted RBP6.96□□□□□ -1.29
SMG1-202ENST00000446231 RPS16P62249 146 aaKnown RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 RPS15P62841 145 aaKnown RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 FAAP24Q9BTP7 215 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 GDE1Q9NZC3 331 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 A6NNC1 897 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 SCGB1C2P0DMR2 95 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 LSM6P62312 80 aaKnown RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 C1orf100Q5SVJ3 147 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 OR10J4P0C629 311 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 DEGS2Q6QHC5 323 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 RNF126Q9BV68 326 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 RER1O15258 196 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 CIDEAO60543 219 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 FUT6P51993 359 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 CDKN3Q16667 212 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 FAM69BQ5VUD6 431 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 LHFPL2Q6ZUX7 228 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 H1FOOQ8IZA3 346 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 C12orf76Q8N812 135 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 RDH5Q92781 318 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 KISS1RQ969F8 398 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 TMEM204Q9BSN7 226 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 DDX60LQ5H9U9 1706 aaKnown RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 JOSD1Q15040 202 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 ZXDCQ2QGD7 858 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 BATF2Q8N1L9 274 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 LPAR5Q9H1C0 372 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 TBC1D29Q9UFV1 150 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 HOXB2P14652 356 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 FSTP19883 344 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 ACTL6BO94805 426 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 THBS4P35443 961 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 WDR25Q64LD2 544 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 ASB5Q8WWX0 329 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 FAM122AQ96E09 287 aa6.96□□□□□ -1.3
SMG1-202ENST00000446231 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.96□□□□□ -1.3
SMG1-202ENST00000446231 EWSR1Q01844 656 aaKnown RBP eCLIP6.95□□□□□ -1.3
SMG1-202ENST00000446231 FAM78AQ5JUQ0 283 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 RBMXL3Q8N7X1 1067 aaKnown RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 MRPL30Q8TCC3 161 aaKnown RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 WNK3Q9BYP7 1800 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 CDS2O95674 445 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 FBXO46Q6PJ61 603 aaPredicted RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 WFDC1Q9HC57 220 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 RREB1Q92766 1687 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 TBX6O95947 436 aaPredicted RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 RPS4XP62701 263 aaKnown RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 PECRQ9BY49 303 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 NEUROG3Q9Y4Z2 214 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 VSIG8P0DPA2 414 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 SHISA6Q6ZSJ9 500 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 OR1F12Q8NHA8 337 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 RNF2Q99496 336 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 HCFC1R1Q9NWW0 138 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 PDE6DO43924 150 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 SPSB1Q96BD6 273 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 ANXA10Q9UJ72 324 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 M0R2Z0 102 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 FAM157CP0CG43 387 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 RPS11P62280 158 aaKnown RBP eCLIP6.95□□□□□ -1.3
SMG1-202ENST00000446231 FAM174AQ8TBP5 190 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 CPT1CQ8TCG5 803 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 NRTNQ99748 197 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 SPRY1O43609 319 aaPredicted RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 AMBPP02760 352 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 APOBEC4Q8WW27 367 aaKnown RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 SH2D2AQ9NP31 389 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 TBX21Q9UL17 535 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 NCOA6Q14686 2063 aaPredicted RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 ANKHD1Q8IWZ3 2542 aaKnown RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 PMS2P1A4D2B8 440 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 CTSVO60911 334 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 HNRNPA1P09651 372 aaKnown RBP eCLIP6.95□□□□□ -1.3
SMG1-202ENST00000446231 APLNRP35414 380 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 MEF2BQ02080 365 aaPredicted RBP6.95□□□□□ -1.3
SMG1-202ENST00000446231 TMEM251Q8N6I4 163 aa6.95□□□□□ -1.3
SMG1-202ENST00000446231 MISP3Q96FF7 219 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms