RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PHIPQ8WWQ0 1821 aa5.4□□□□□ -1.55
SCN1A-203ENST00000409050 ASPDHA6ND91 283 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PRRT4C9JH25 899 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 HIST3H3Q16695 136 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PLPPR5Q32ZL2 321 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 C5orf17Q8NAS9 161 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ADAMTS17Q8TE56 1095 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 FAM216AQ8WUB2 273 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF775Q96BV0 537 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 SAP30LQ9HAJ7 183 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 CHD4Q14839 1912 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 MYH4Q9Y623 1939 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TRAV30A0A087WSZ9 112 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 LEUTXA8MZ59 168 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 FCGR3BO75015 233 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 KIR3DL2P43630 455 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 SUCLG1P53597 346 aaKnown RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 B4GALNT1Q00973 533 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 HYAL1Q12794 435 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 C1QTNF12Q5T7M4 302 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 FAM78BQ5VT40 261 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TEPPQ6URK8 271 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 CLEC18BQ6UXF7 455 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 RTN4RL1Q86UN2 441 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TM4SF19Q96DZ7 209 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 GPX7Q96SL4 187 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 MBD1Q9UIS9 605 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ALS2Q96Q42 1657 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 USP54Q70EL1 1684 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 C7orf77A4D0Y5 90 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 C17orf51A8MQB3 221 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 K7ESM1 405 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 NDUFA2O43678 99 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 GNB2P62879 340 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TWIST1Q15672 202 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 HYAL4Q2M3T9 481 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TEX30Q5JUR7 227 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 OR4A47Q6IF82 309 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM88Q6PEY1 159 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PARM1Q6UWI2 310 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 WFDC8Q8IUA0 241 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 FAM24BQ8N5W8 94 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 SLC26A1Q9H2B4 701 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 MS4A5Q9H3V2 200 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF665Q9H7R5 613 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF256Q9Y2P7 627 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 POM121BA6NF01 834 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 NPIPB13A6NJU9 1138 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 OR4C45A6NMZ5 311 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 NPIPB4C9JG80 1138 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 HPRT1P00492 218 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 GYPAP02724 150 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 RBP4P02753 201 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 CCR2P41597 374 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 CLDN18P56856 261 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TNFAIP6P98066 277 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 RELBQ01201 579 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PRSS36Q5K4E3 855 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PQLC2Q6ZP29 291 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF738Q8NE65 137 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 MRPL24Q96A35 216 aaKnown RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TRMT61AQ96FX7 289 aaKnown RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 WFIKKN1Q96NZ8 548 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 RSG1Q9BU20 258 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 LRRC61Q9BV99 259 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 DEFB127Q9H1M4 99 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TOGARAM1Q9Y4F4 1720 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 MICAL3Q7RTP6 2002 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 LIPT2A6NK58 231 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PPP1R17O96001 155 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PPYP01298 95 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 COX5BP10606 129 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 SPNP16150 400 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF32P17041 273 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 TNFSF10P50591 281 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 SMAD2Q15796 467 aaKnown RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 UBE2V2Q15819 145 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 NKG7Q16617 165 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 NSUN5P2Q63ZY6 315 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 OR8B3Q8NGG8 313 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 ATOH1Q92858 354 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 STARD4Q96DR4 205 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 OR8B2Q96RD0 313 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 PARP12Q9H0J9 701 aaKnown RBP5.39□□□□□ -1.55
SCN1A-203ENST00000409050 SH3BGRL3Q9H299 93 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 CNTD2Q9H8S5 307 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 KCNMB2Q9Y691 235 aa5.39□□□□□ -1.55
SCN1A-203ENST00000409050 HELTA6NFD8 242 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 G3V3Y1 287 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 H0Y980 276 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TCAPO15273 167 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 APCSP02743 223 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 CRYBA1P05813 215 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 PRSS1P07477 247 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 METAP1P53582 386 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 SLC37A1P57057 533 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 EWSR1Q01844 656 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM196Q5HYL7 178 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 TDHQ8IZJ6 230 aa5.38□□□□□ -1.55
SCN1A-203ENST00000409050 VN1R1Q9GZP7 353 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms