RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 OR4K15Q8NH41 348 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 Q8TCH9 128 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 DEDD2Q8WXF8 326 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 DCAF16Q9NXF7 216 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 ING3Q9NXR8 418 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 ETAA1Q9NY74 926 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 NPTNQ9Y639 398 aa22.55■■□□□ 1.2
MSX1-201ENST00000382723 A6NNC1 897 aa22.54■■□□□ 1.2
MSX1-201ENST00000382723 PMP2P02689 132 aa22.54■■□□□ 1.2
MSX1-201ENST00000382723 CD74P04233 296 aa22.54■■□□□ 1.2
MSX1-201ENST00000382723 NAT1P18440 290 aa22.54■■□□□ 1.2
MSX1-201ENST00000382723 WIPI2Q9Y4P8 454 aa22.54■■□□□ 1.2
MSX1-201ENST00000382723 RBM39Q14498 530 aaKnown RBP22.53■■□□□ 1.2
MSX1-201ENST00000382723 RNASE10Q5GAN6 216 aaKnown RBP22.53■■□□□ 1.2
MSX1-201ENST00000382723 FAIMQ9NVQ4 179 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 PKDREJQ9NTG1 2253 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 MYO18BQ8IUG5 2567 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 IGKV1D-8A0A087WSZ0 117 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 DTYMKP23919 212 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 MICBQ29980 383 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 OR51S1Q8NGJ8 323 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 PPA2Q9H2U2 334 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 CBLN4Q9NTU7 201 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 PLEKHA6Q9Y2H5 1048 aa22.53■■□□□ 1.2
MSX1-201ENST00000382723 KLF2Q9Y5W3 355 aaPredicted RBP22.53■■□□□ 1.2
MSX1-201ENST00000382723 OR2AT4A6NND4 320 aa22.52■■□□□ 1.2
MSX1-201ENST00000382723 AMY2AP04746 511 aa22.52■■□□□ 1.2
MSX1-201ENST00000382723 PSG2P11465 335 aa22.52■■□□□ 1.2
MSX1-201ENST00000382723 CACNA1DQ01668 2161 aa22.52■■□□□ 1.2
MSX1-201ENST00000382723 UPRTQ96BW1 309 aa22.52■■□□□ 1.2
MSX1-201ENST00000382723 METRNQ9UJH8 293 aa22.52■■□□□ 1.2
MSX1-201ENST00000382723 LRRC30A6NM36 301 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 HPXP02790 462 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 TCRBP04435 133 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 GLAP06280 429 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 SOD3P08294 240 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 AGAP6Q5VW22 663 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 RSBN1Q5VWQ0 802 aaPredicted RBP22.51■■□□□ 1.19
MSX1-201ENST00000382723 CD177Q8N6Q3 437 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 CCL17Q92583 94 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 HPS1Q92902 700 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 CHST6Q9GZX3 395 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 UBTD1Q9HAC8 227 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 PSPNO60542 156 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 PRDX2P32119 198 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 GABRA2P47869 451 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 COL10A1Q03692 680 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 Q6ZPA2 131 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 FAM90A1Q86YD7 464 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 NUDT15Q9NV35 164 aa22.51■■□□□ 1.19
MSX1-201ENST00000382723 USP9XQ93008 2570 aaPredicted RBP22.5■■□□□ 1.19
MSX1-201ENST00000382723 IGKV1D-17A0A075B6S4 117 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 TRAV6A0A075B6T7 132 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 CD8AP01732 235 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 RAB25P57735 213 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 MEF2DQ14814 521 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 ATXN7L3Q14CW9 347 aaPredicted RBP22.5■■□□□ 1.19
MSX1-201ENST00000382723 CHRFAM7AQ494W8 412 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 DEFB108BQ8NET1 73 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 OR5H2Q8NGV7 314 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 SLC6A7Q99884 636 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 UBR5O95071 2799 aaPredicted RBP22.5■■□□□ 1.19
MSX1-201ENST00000382723 DOPEY1Q5JWR5 2465 aa22.5■■□□□ 1.19
MSX1-201ENST00000382723 PPOXP50336 477 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 SCGB2B2Q4G0G5 96 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 PLPPR1Q8TBJ4 325 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 TMEM165Q9HC07 324 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 EDARQ9UNE0 448 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 CHD6Q8TD26 2715 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 NAPSAO96009 420 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 ZNF735P0CB33 412 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 TBPP20226 339 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 LMO1P25800 156 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 OR3A3P47888 321 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 ASCC1Q8N9N2 400 aaKnown RBP22.49■■□□□ 1.19
MSX1-201ENST00000382723 COPZ2Q9P299 210 aa22.49■■□□□ 1.19
MSX1-201ENST00000382723 ABCA4P78363 2273 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 DISC1C4P0D8 188 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 IFNL4K9M1U5 179 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 IFNA6P05013 189 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 DANCRP0C864 163 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 TAS2R46P59540 309 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 ARPC4P59998 168 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 OR5AP2Q8NGF4 316 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 TMEM106BQ9NUM4 274 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 ANXA10Q9UJ72 324 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 LAMP3Q9UQV4 416 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 NUBP2Q9Y5Y2 271 aa22.48■■□□□ 1.19
MSX1-201ENST00000382723 HRNRQ86YZ3 2850 aaPredicted RBP22.47■■□□□ 1.19
MSX1-201ENST00000382723 ACTBL2Q562R1 376 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 C11orf71Q6IPW1 123 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 C20orf204Q6ZNR8 217 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 MRPL30Q8TCC3 161 aaKnown RBP22.47■■□□□ 1.19
MSX1-201ENST00000382723 CREB3L1Q96BA8 519 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 MARVELD1Q9BSK0 173 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 ZNF286AQ9HBT8 521 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 IGHV1-69-2A0A0G2JMI3 117 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 TMEM82A0PJX8 343 aa22.47■■□□□ 1.19
MSX1-201ENST00000382723 SDCBPO00560 298 aaPredicted RBP22.47■■□□□ 1.19
MSX1-201ENST00000382723 MDH2P40926 338 aaKnown RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms