RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SELENOIQ9C0D9 397 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 SHPKQ9UHJ6 478 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 RHBDD3Q9Y3P4 386 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 IGHV1-18A0A0C4DH31 117 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 TEX13DA0A0J9YY54 714 aaPredicted RBP10.66□□□□□ -0.7
CIITA-202ENST00000381835 FAM90A27PA6NNH2 459 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 F8VVB4 439 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 F8VWA3 439 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 ATXN7O15265 892 aaPredicted RBP10.66□□□□□ -0.7
CIITA-202ENST00000381835 HOXA1P49639 335 aaPredicted RBP10.66□□□□□ -0.7
CIITA-202ENST00000381835 IGFBP7Q16270 282 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 NKAPLQ5M9Q1 402 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 Q6ZSR3 168 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 PGAP1Q75T13 922 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 OR52N4Q8NGI2 321 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 NPRL2Q8WTW4 380 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 SPACA5Q96QH8 159 aa10.66□□□□□ -0.7
CIITA-202ENST00000381835 ZNF98A6NK75 572 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 M0R1B8 84 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 SMPD2O60906 423 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 IGLV1-44P01699 117 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 VSIG8P0DPA2 414 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 CHRNB4P30926 498 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 THBS4P35443 961 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 TAS2R31P59538 309 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 SRSF3P84103 164 aaKnown RBP10.65□□□□□ -0.7
CIITA-202ENST00000381835 ADORA2A-AS1P86434 159 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 CYCSP99999 105 aaKnown RBP10.65□□□□□ -0.7
CIITA-202ENST00000381835 TLE1Q04724 770 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 CCDC54Q8NEL0 328 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 OR5L1Q8NGL2 311 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 PP6455Q8WZ26 134 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 REPIN1Q9BWE0 567 aaKnown RBP10.65□□□□□ -0.7
CIITA-202ENST00000381835 TREM1Q9NP99 234 aa10.65□□□□□ -0.7
CIITA-202ENST00000381835 DBX1A6NMT0 343 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 DHRS7CA6NNS2 312 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 BPNT1O95861 308 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 HCKP08631 526 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 UQCRFS1P47985 274 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 UCP2P55851 309 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 ERVS71-1P61550 626 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR8B8Q15620 311 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 UBE2V2Q15819 145 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 ZNF529Q6P280 563 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR4K15Q8NH41 348 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 TMED6Q8WW62 240 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 C10orf35Q96D05 121 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 NMES1Q9C002 83 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 CHST5Q9GZS9 411 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 TLNRD1Q9H1K6 362 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 FN3KRPQ9HA64 309 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 GPR173Q9NS66 373 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 TMEM100Q9NV29 134 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 ICE1Q9Y2F5 2266 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 IGKV1-9A0A0C4DH69 117 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 NUDT19A8MXV4 375 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 SCGNO76038 276 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 TBPP20226 339 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 GNLYP22749 145 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 RAB13P51153 203 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 NAAAQ02083 359 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 DHRS7BQ6IAN0 325 aaPredicted RBP10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR5AS1Q8N127 324 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 BHLHE23Q8NDY6 225 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR56B2PQ8NGI1 322 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR1J1Q8NGS3 322 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR10R2Q8NGX6 335 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 PIGCQ92535 297 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 RNF126Q9BV68 326 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 OR2J1Q9GZK6 312 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 TMEM231Q9H6L2 316 aa10.64□□□□□ -0.71
CIITA-202ENST00000381835 CARHSP1Q9Y2V2 147 aaKnown RBP10.64□□□□□ -0.71
CIITA-202ENST00000381835 PLCE1Q9P212 2302 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 IGHV2OR16-5A0A0B4J2B6 119 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 NKX2-6A6NCS4 301 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 SSX5O60225 188 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 SNAPINO95295 136 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 F12P00748 615 aaPredicted RBP10.63□□□□□ -0.71
CIITA-202ENST00000381835 PPP1CBP62140 327 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 POLR2GP62487 172 aaKnown RBP eCLIP10.63□□□□□ -0.71
CIITA-202ENST00000381835 QRFPP83859 136 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 PNLIPRP3Q17RR3 467 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 C10orf91Q5T1B1 145 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 AWAT2Q6E213 333 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 RNF144BQ7Z419 303 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 HOGA1Q86XE5 327 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 FAM169BQ8N8A8 192 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 ZSCAN4Q8NAM6 433 aaPredicted RBP10.63□□□□□ -0.71
CIITA-202ENST00000381835 PIGTQ969N2 578 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 RRNAD1Q96FB5 475 aaKnown RBP10.63□□□□□ -0.71
CIITA-202ENST00000381835 MMP26Q9NRE1 261 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 TRBV6-7A0A0A0MS04 114 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 ZNF705EA8MWA4 302 aaPredicted RBP10.63□□□□□ -0.71
CIITA-202ENST00000381835 NRASP01111 189 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 ZNF93P35789 620 aaPredicted RBP10.63□□□□□ -0.71
CIITA-202ENST00000381835 ASCL1P50553 236 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 TMEM128Q5BJH2 165 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 RTN4RL2Q86UN3 420 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 ANGPTL5Q86XS5 388 aa10.63□□□□□ -0.71
CIITA-202ENST00000381835 TERB2Q8NHR7 220 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms