RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 OR5H8P0DN80 308 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 ZBTB25P24278 435 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 PTAFRP25105 342 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 BAMBIQ13145 260 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 PPP1R1AQ13522 171 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 GRK1Q15835 563 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 SLC22A25Q6T423 547 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 SPICQ8N5J4 248 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 NUP37Q8NFH4 326 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 TMEM230Q96A57 120 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 DPCDQ9BVM2 203 aaPredicted RBP11.65□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF436Q9C0F3 470 aaPredicted RBP11.65□□□□□ -0.55
PTPRF-202ENST00000372405 SPACA1Q9HBV2 294 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 DLL4Q9NR61 685 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 PIPOXQ9P0Z9 390 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 MGAT4CQ9UBM8 478 aa11.65□□□□□ -0.55
PTPRF-202ENST00000372405 TMEM8BA6NDV4 472 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 A6NLC8 198 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 G3V3Q6 166 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 H3BUI4 141 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 SLC33A1O00400 549 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-202ENST00000372405 DEGS1O15121 323 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 PTBP3O95758 552 aaKnown RBP11.64□□□□□ -0.55
PTPRF-202ENST00000372405 OR2H2O95918 312 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 GSTT2P0CG29 244 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 SFTPCP11686 197 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF44P15621 663 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 PI3P19957 117 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 CD200P41217 278 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 GZMKP49863 264 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 ASCL1P50553 236 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 SNTB1Q13884 538 aaKnown RBP11.64□□□□□ -0.55
PTPRF-202ENST00000372405 NLRC3Q7RTR2 1065 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 OR2AK2Q8NG84 335 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 FAM210AQ96ND0 272 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF2Q9BSG1 426 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-202ENST00000372405 RTBDNQ9BSG5 229 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-202ENST00000372405 TMPRSS13Q9BYE2 586 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF286AQ9HBT8 521 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 Q9N2K0 584 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 CACNA1DQ01668 2161 aa11.64□□□□□ -0.55
PTPRF-202ENST00000372405 SIRPB1O00241 398 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 HLA-AP01891 365 aaKnown RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 FPR2P25090 351 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 GRNP28799 593 aaKnown RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 CEBPDP49716 269 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 H2BFSP57053 126 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 RPS23P62266 143 aaKnown RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 Q6ZS49 121 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 TMEM17Q86X19 198 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 MRPL30Q8TCC3 161 aaKnown RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 MRPL24Q96A35 216 aaKnown RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 ELMOD3Q96FG2 381 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 CHMP1AQ9HD42 196 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 DECR2Q9NUI1 292 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 NECAP2Q9NVZ3 263 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 TAAR3PQ9P1P4 343 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 NKX2-6A6NCS4 301 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 FAM90A27PA6NNH2 459 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 ERVH48-1M5A8F1 160 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 GLAP06280 429 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 AKR1C4P17516 323 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 CHRNB4P30926 498 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 FBXL19-AS1Q494R0 122 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 Q5BKY6 102 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 IGSF11Q5DX21 431 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 SPIN3Q5JUX0 258 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 FAHD2BQ6P2I3 314 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 DHRS11Q6UWP2 260 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 ACP7Q6ZNF0 438 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 LYG2Q86SG7 212 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 OR11H4Q8NGC9 324 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 NEK7Q8TDX7 302 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 FAHD2AQ96GK7 314 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 ZNF486Q96H40 463 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-202ENST00000372405 C1orf123Q9NWV4 160 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 BOLA1Q9Y3E2 137 aa11.63□□□□□ -0.55
PTPRF-202ENST00000372405 HIVEP3Q5T1R4 2406 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 C9orf170A2RU37 121 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 SPRY3O43610 288 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 OR2A4O95047 310 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 SIX6O95475 246 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 TFF1P04155 84 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 PPP3CBP16298 524 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 GLRA1P23415 457 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 SRSF7Q16629 238 aaKnown RBP eCLIP11.62□□□□□ -0.555e-7■■■□□ 16.8
PTPRF-202ENST00000372405 DCAF12L2Q5VW00 463 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 C12orf45Q8N5I9 185 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-202ENST00000372405 UXS1Q8NBZ7 420 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 TMEM185AQ8NFB2 350 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 PLPPR1Q8TBJ4 325 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 OR2V2Q96R30 315 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 OR2A7Q96R45 310 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 TRAF4Q9BUZ4 470 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-202ENST00000372405 CHIAQ9BZP6 476 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 PLSCR3Q9NRY6 295 aa11.62□□□□□ -0.55
PTPRF-202ENST00000372405 TRBV6-6A0A0A6YYG2 114 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 PLSCR5A0PG75 271 aa11.61□□□□□ -0.55
PTPRF-202ENST00000372405 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-202ENST00000372405 PSPNO60542 156 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms