RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 UCP3P55916 312 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 EIF2B1Q14232 305 aaKnown RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF385BQ569K4 471 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 DHRS13Q6UX07 377 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PLXDC2Q6UX71 529 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 C6orf15Q6UXA7 325 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 OR10AG1Q8NH19 301 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ATP6V0E2Q8NHE4 81 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GRAPLQ8TC17 118 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ABHD14AQ9BUJ0 271 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MMP17Q9ULZ9 603 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ADAMTS7Q9UKP4 1686 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CAMTA1Q9Y6Y1 1673 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SCN11AQ9UI33 1791 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TRAV34A0A0B4J273 112 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 F8W1H4 67 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 HS3ST1O14792 307 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 HLA-DQA1P01909 254 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 H2BFMP0C1H6 154 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 LAMP2P13473 410 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 PSMB5P28074 263 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 TMPRSS3P57727 454 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 NR0B2Q15466 257 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SHISA2Q6UWI4 295 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 LCN15Q6UWW0 184 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 RPTNQ6XPR3 784 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF761Q86XN6 746 aaPredicted RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 WFDC8Q8IUA0 241 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 RARRES2Q99969 163 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SGIP1Q9BQI5 828 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 EDDM13A0A1B0GTR0 161 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 MSTNO14793 375 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GPX1P07203 203 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GNB3P16520 340 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 CRYBB3P26998 211 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 OPRM1P35372 400 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SGSHP51688 502 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 RPL15P61313 204 aaKnown RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SMAD3P84022 425 aaKnown RBP3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SGMS2Q8NHU3 365 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 GLMPQ8WWB7 406 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 WBP2Q969T9 261 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 ST6GALNAC5Q9BVH7 336 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 SLC17A4Q9Y2C5 497 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 DLG5Q8TDM6 1919 aa3.64□□□□□ -1.83
NEDD4-201ENST00000338963 A0A1W2PPK0 400 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM72CH0Y354 149 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 HIST1H1CP16403 213 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 SOX2P48431 317 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ARG2P78540 354 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PLCXD2Q0VAA5 305 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 C1orf100Q5SVJ3 147 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM72AQ5TYM5 149 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 HLA-DQA1Q5Y7H0 255 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM72DQ6L9T8 149 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 Q6ZWC4 215 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM57BQ71RH2 274 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 BHLHA9Q7RTU4 235 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM72BQ86X60 149 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 CDC20BQ86Y33 519 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TTC9CQ8N5M4 171 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 OR9G4Q8NGQ1 327 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 KCNG3Q8TAE7 436 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 MAGEH1Q9H213 219 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 SCN7AQ01118 1682 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ALS2Q96Q42 1657 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 CACNA1FO60840 1977 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TRAV25A0A0B4J276 109 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 CPSF4LA6NMK7 179 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 B4DGG1 531 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GRM6O15303 877 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 B3GALT2O43825 422 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GDF9O60383 454 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 UTS2O95399 124 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 MRPL3P09001 348 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 OR9G9P0C7N8 305 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 HTR1DP28221 377 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 OR3A4PP47883 348 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM27D1Q5T7N8 215 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM90A2PQ658T7 463 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 INO80CQ6PI98 192 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ZFP62Q8NB50 900 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FAM131CQ96AQ9 280 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PCED1BQ96HM7 432 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FCRL2Q96LA5 508 aaPredicted RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 ZNF681Q96N22 645 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TSSK2Q96PF2 358 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GGTLC1Q9BX51 225 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 NRN1Q9NPD7 142 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 PSG8Q9UQ74 426 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 COL24A1Q17RW2 1714 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 AOAHP28039 575 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 APOBEC1P41238 236 aaKnown RBP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 RPS11P62280 158 aaKnown RBP eCLIP3.63□□□□□ -1.83
NEDD4-201ENST00000338963 GNG3P63215 75 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 FOXF1Q12946 379 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 TMEM42Q69YG0 159 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 NXPE1Q8N323 547 aa3.63□□□□□ -1.83
NEDD4-201ENST00000338963 LRTM2Q8N967 370 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms