RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 KLF12Q9Y4X4 402 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 RFNGQ9Y644 331 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 POLQO75417 2590 aa1.93□□□□□ -2.1
HMGB1-201ENST00000326004 CCDC171Q6TFL3 1326 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SPTA1P02549 2419 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 EDC4Q6P2E9 1401 aaKnown RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 FRYQ5TBA9 3013 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 IGF2RP11717 2491 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 NOTCH2Q04721 2471 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SPRR5A0A1B0GTR4 108 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 GOLGA8IPA6NC78 632 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MKRN2OSH3BPM6 223 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 H7C2Y5 167 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 GATCO43716 136 aaKnown RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CTNSO60931 367 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 YIF1AO95070 293 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 LDOC1O95751 146 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CD3GP09693 182 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 THRAP10827 490 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 LIPCP11150 499 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 TCN2P20062 427 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 RAB3AP20336 220 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 NPY1RP25929 384 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 PSMB6P28072 239 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MYCNOSP40205 109 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 P2RY2P41231 377 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 PPP1R2P41236 205 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MAGEA6P43360 314 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 HCAR3P49019 387 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MLF1P58340 268 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MYL6P60660 151 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 DSTNP60981 165 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 PPP1CBP62140 327 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 VSNL1P62760 191 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CACNG7P62955 275 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SKP1P63208 163 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 BASP1P80723 227 aaKnown RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ST3GAL4Q11206 333 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MOBPQ13875 183 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ZBTB6Q15916 424 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CCDC153Q494R4 210 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 METTL21CQ5VZV1 264 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 PPP1R2P3Q6NXS1 205 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 PLET1Q6UQ28 207 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 EPGNQ6UW88 154 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 TRMT10CQ7L0Y3 403 aaKnown RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 DEFB128Q7Z7B8 93 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SETD3Q86TU7 594 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CA13Q8N1Q1 262 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ZNF561Q8N587 486 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 OR2Y1Q8NGV0 311 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 PHOSPHO2Q8TCD6 241 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 RGP1Q92546 391 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ARL5BQ96KC2 179 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 LINC00477Q96M19 166 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ZFP3Q96NJ6 502 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 RNF157Q96PX1 679 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 TSNAXQ99598 290 aaKnown RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CIB1Q99828 191 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MED10Q9BTT4 135 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 BEX2Q9BXY8 128 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SLIRPQ9GZT3 109 aaKnown RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 EDA2RQ9HAV5 297 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 C12orf4Q9NQ89 552 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SIRT7Q9NRC8 400 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 RGS18Q9NS28 235 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SDHAF2Q9NX18 166 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 MAT2BQ9NZL9 334 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 CYB5R1Q9UHQ9 305 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SCML1Q9UN30 329 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 SLC22A14Q9Y267 594 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ATP6V1DQ9Y5K8 247 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 URGCP-MRPS24S4R325 110 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 IGSF10Q6WRI0 2623 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 OTOFQ9HC10 1997 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 UBR5O95071 2799 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-201ENST00000326004 KALRNO60229 2985 aa1.92□□□□□ -2.1
HMGB1-201ENST00000326004 ELP1O95163 1332 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 TICRRQ7Z2Z1 1910 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 NBEAQ8NFP9 2946 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SMG1Q96Q15 3661 aaKnown RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ZZEF1O43149 2961 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 IGKV6-21A0A0C4DH24 114 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 A0A0U1RQV1 116 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SMLR1H3BR10 107 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 GOLGA8RI6L899 631 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 BPY2O14599 106 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 TOR1AO14656 332 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CYTH3O43739 400 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ENSAO43768 121 aaKnown RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 CDC40O60508 579 aaKnown RBP eCLIP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 GCM2O75603 506 aaPredicted RBP1.91□□□□□ -2.1
HMGB1-201ENST00000326004 OR5F1O95221 314 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ATP6V1G2O95670 118 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 GLAP06280 429 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 S100A6P06703 90 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 GP1BAP07359 652 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 ADRA2AP08913 450 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 OR56A5P0C7T3 313 aa1.91□□□□□ -2.1
HMGB1-201ENST00000326004 SLC35E2BP0CK96 405 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms