RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 UBE2NP61088 152 aaKnown RBP20.48■□□□□ 0.87
TRIM54-201ENST00000296098 MYPOPQ86VE0 399 aaPredicted RBP20.48■□□□□ 0.87
TRIM54-201ENST00000296098 CCDC36Q8IYA8 594 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 GCNT2Q8N0V5 402 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 TMED6Q8WW62 240 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 ZNF488Q96MN9 340 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 TRIB1Q96RU8 372 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 PCDHB10Q9UN67 800 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 LSM5Q9Y4Y9 91 aaKnown RBP20.48■□□□□ 0.87
TRIM54-201ENST00000296098 KIR2DS1A0A191URI9 304 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 H7C1Q1 480 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 K7EPK0 472 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 LRP3O75074 770 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 SCGB1D2O95969 90 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 TK1P04183 234 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 CELA3BP08861 270 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 SPINK2P20155 84 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 IGHV1-2P23083 117 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 IL32P24001 234 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 KIR2DS4P43632 304 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 MRPL49Q13405 166 aaKnown RBP20.48■□□□□ 0.87
TRIM54-201ENST00000296098 KIR2DS1Q14954 304 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 TSC22D1Q15714 1073 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 IGFL2Q6UWQ7 119 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 FAM71E2Q8N5Q1 922 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 GLYATL2Q8WU03 294 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 MSI2Q96DH6 328 aaKnown RBP20.48■□□□□ 0.87
TRIM54-201ENST00000296098 TMEM100Q9NV29 134 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 FBXO9Q9UK97 447 aaPredicted RBP20.48■□□□□ 0.87
TRIM54-201ENST00000296098 PHF1O43189 567 aaPredicted RBP20.47■□□□□ 0.87
TRIM54-201ENST00000296098 WT1P19544 449 aaPredicted RBP20.47■□□□□ 0.87
TRIM54-201ENST00000296098 IL13RA2Q14627 380 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 FBXW12Q6X9E4 464 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 LYZL2Q7Z4W2 148 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 FAM185AQ8N0U4 392 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 SPERTQ8NA61 448 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 SUMF2Q8NBJ7 301 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 OR1S2Q8NGQ3 325 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 RNF141Q8WVD5 230 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 C17orf50Q8WW18 174 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 PRRX2Q99811 253 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 OR51I2Q9H344 312 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 PIGMQ9H3S5 423 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 OR2S2Q9NQN1 319 aa20.47■□□□□ 0.87
TRIM54-201ENST00000296098 BET1O15155 118 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 SMPD2O60906 423 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 RPL12P30050 165 aaKnown RBP20.46■□□□□ 0.87
TRIM54-201ENST00000296098 EIF5AP63241 154 aaKnown RBP20.46■□□□□ 0.87
TRIM54-201ENST00000296098 FAM214BQ7L5A3 538 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 FAM58AQ8N1B3 248 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 CDH20Q9HBT6 801 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 COQ3Q9NZJ6 369 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 LHX6Q9UPM6 363 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 CACNA1HO95180 2353 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 J3QT63 122 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 SCTP09683 121 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 GLI4P10075 376 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 STPG2Q8N412 459 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 SREK1IP1Q8N9Q2 155 aaPredicted RBP20.46■□□□□ 0.87
TRIM54-201ENST00000296098 GTF3AQ92664 365 aaKnown RBP20.46■□□□□ 0.87
TRIM54-201ENST00000296098 RTL8AQ9BWD3 113 aa20.46■□□□□ 0.87
TRIM54-201ENST00000296098 RIMS4Q9H426 269 aaPredicted RBP20.46■□□□□ 0.87
TRIM54-201ENST00000296098 DOCK7Q96N67 2140 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 TRAV17A0A0B4J275 112 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 A0A1W2PR80 420 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 TRDCB7Z8K6 153 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 HOXD4P09016 255 aaPredicted RBP20.45■□□□□ 0.86
TRIM54-201ENST00000296098 IDH3GP51553 393 aaPredicted RBP20.45■□□□□ 0.86
TRIM54-201ENST00000296098 PPP1CBP62140 327 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 HERPUD1Q15011 391 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 OR2A2Q6IF42 318 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 TP53RKQ96S44 253 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 ATP23Q9Y6H3 246 aa20.45■□□□□ 0.86
TRIM54-201ENST00000296098 MPPED1O15442 326 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 LYZL6O75951 148 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 MBPP02686 304 aaPredicted RBP20.44■□□□□ 0.86
TRIM54-201ENST00000296098 OTOGLQ3ZCN5 2332 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 MARC2Q969Z3 335 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 C3orf85A0A1B0GTC6 90 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 AQP7O14520 342 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 SRPXP78539 464 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 GUSBP1Q15486 140 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 RPL7L1Q6DKI1 246 aaKnown RBP20.44■□□□□ 0.86
TRIM54-201ENST00000296098 Q6ZT83 130 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 C5orf24Q7Z6I8 188 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 C17orf78Q8N4C9 275 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 ZNF565Q8N9K5 539 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 LHFPL5Q8TAF8 219 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 MRPL30Q8TCC3 161 aaKnown RBP20.44■□□□□ 0.86
TRIM54-201ENST00000296098 PLEKHA2Q9HB19 425 aa20.44■□□□□ 0.86
TRIM54-201ENST00000296098 SHANK1Q9Y566 2161 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 RHBDL1O75783 438 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 SLC34A2O95436 690 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 CTXN2P0C2S0 81 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 GNRHRP30968 328 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 SECTM1Q8WVN6 248 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 OR2J1Q9GZK6 312 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 TMED3Q9Y3Q3 217 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 TRAV24A0A0B4J272 114 aa20.43■□□□□ 0.86
TRIM54-201ENST00000296098 RAB19A4D1S5 217 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms