RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 H2AFY2Q9P0M6 372 aaPredicted RBP15.41■□□□□ 0.06
CLN3-262ENST00000637699 HHLA2Q9UM44 414 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 TRGV10A0A0A0MS01 117 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 SIRPB1O00241 398 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 GATBO75879 557 aaKnown RBP15.4■□□□□ 0.06
CLN3-262ENST00000637699 ATP5HO75947 161 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 IGLV1-47P01700 117 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 BCL3P20749 454 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 ERP29P30040 261 aaKnown RBP15.4■□□□□ 0.06
CLN3-262ENST00000637699 GDNFP39905 211 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 THBS3P49746 956 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 PTGES3Q15185 160 aaKnown RBP15.4■□□□□ 0.06
CLN3-262ENST00000637699 ATP6AP1Q15904 470 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 Q8IYB0 196 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 FAM58AQ8N1B3 248 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 MNTQ99583 582 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 TBX5Q99593 518 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 GAL3ST2Q9H3Q3 398 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 ZNF286AQ9HBT8 521 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 CLN6Q9NWW5 311 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 GLS2Q9UI32 602 aa15.4■□□□□ 0.06
CLN3-262ENST00000637699 M0QZK8 103 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 TOR1AO14656 332 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 MITFO75030 526 aaPredicted RBP15.39■□□□□ 0.05
CLN3-262ENST00000637699 ENTPD6O75354 484 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 SERPINA3P01011 423 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 PRKACAP17612 351 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 CEACAM3P40198 252 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 POU3F4P49335 361 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 RPL23AP62750 156 aaKnown RBP15.39■□□□□ 0.05
CLN3-262ENST00000637699 KPNB1Q14974 876 aaKnown RBP15.39■□□□□ 0.05
CLN3-262ENST00000637699 TPTE2P1Q5T6R2 138 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 HEPN1Q6WQI6 88 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 C18orf65Q6ZTR6 163 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 SSX6Q7RTT6 188 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 CATSPERDQ86XM0 798 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 DNAJC9Q8WXX5 260 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 MCRIP2Q9BUT9 160 aaKnown RBP15.39■□□□□ 0.05
CLN3-262ENST00000637699 ADI1Q9BV57 179 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 CHST5Q9GZS9 411 aa15.39■□□□□ 0.05
CLN3-262ENST00000637699 BUB1B-PAK6H3BSN5 160 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 CYB5AP00167 134 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 KRT8P05787 483 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 EPHA2P29317 976 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 OR3A4PP47883 348 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 GLIPR1P48060 266 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 AESQ08117 197 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 DCTN2Q13561 401 aaKnown RBP15.38■□□□□ 0.05
CLN3-262ENST00000637699 RBM39Q14498 530 aaKnown RBP15.38■□□□□ 0.05
CLN3-262ENST00000637699 ZNF146Q15072 292 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 C1orf146Q5VVC0 180 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 UNQ9370/PRO34162Q6UXP9 181 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 C8orf86Q6ZUL3 223 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 AMIGO2Q86SJ2 522 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 TCEANCQ8N8B7 351 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 AP4S1Q9Y587 144 aa15.38■□□□□ 0.05
CLN3-262ENST00000637699 TRBV2A0A0J9YWF9 115 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 NUDT19A8MXV4 375 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 G3V2T6 193 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 MNDAP41218 407 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 RBP2P50120 134 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 ATP1B3P54709 279 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 HLA-DRB5Q30154 266 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 AADACL4Q5VUY2 407 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 OR2W3Q7Z3T1 314 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 TFAP2CQ92754 450 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 CREB3L1Q96BA8 519 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 NOL4LQ96MY1 436 aaPredicted RBP15.37■□□□□ 0.05
CLN3-262ENST00000637699 PRRG3Q9BZD7 231 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 ING3Q9NXR8 418 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 TAS2R3Q9NYW6 316 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 GSTK1Q9Y2Q3 226 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 MOB4Q9Y3A3 225 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 PCDHGB5Q9Y5G0 923 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 HSPE1-MOB4S4R3N1 261 aa15.37■□□□□ 0.05
CLN3-262ENST00000637699 LY6LH3BQJ8 138 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 SH2D1BO14796 132 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 OR2H2O95918 312 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 FAM106CPP0CH98 169 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 FASP25445 335 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 CD34P28906 385 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 PRRX1P54821 245 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 MTCP1P56278 107 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 CDC42P60953 191 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 DGCR2P98153 550 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 SPIN3Q5JUX0 258 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 UTF1Q5T230 341 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 NXNL2Q5VZ03 156 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 KDM4DQ6B0I6 523 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 CORO2AQ92828 525 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 EXOSC4Q9NPD3 245 aaKnown RBP15.36■□□□□ 0.05
CLN3-262ENST00000637699 KRT84Q9NSB2 600 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 U3KQK5 164 aa15.36■□□□□ 0.05
CLN3-262ENST00000637699 FUOMA2VDF0 154 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 NHLRC4P0CG21 123 aaPredicted RBP15.35■□□□□ 0.05
CLN3-262ENST00000637699 MYCNOSP40205 109 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 EFNB1P98172 346 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 SCN1BQ07699 218 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 CCDC144NLQ6NUI1 221 aa15.35■□□□□ 0.05
CLN3-262ENST00000637699 RDH10Q8IZV5 341 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms