RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 NPY6RQ99463 290 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 SAP30LQ9HAJ7 183 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 OR2W1Q9Y3N9 320 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM56-RWDD3S4R434 201 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 NFAT5O94916 1531 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 CNTFRP26992 372 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 HRH1P35367 487 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 DLK1P80370 383 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 PRDX1Q06830 199 aaKnown RBP5.4□□□□□ -1.54
SCN1A-212ENST00000636194 LEMD1Q68G75 181 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 C1orf174Q8IYL3 243 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 MUC20Q8N307 709 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-212ENST00000636194 TMEM37Q8WXS4 190 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 STARD4Q96DR4 205 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 PARP11Q9NR21 331 aa5.4□□□□□ -1.54
SCN1A-212ENST00000636194 FAM90A27PA6NNH2 459 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 FZD9O00144 591 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF737O75373 536 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 IGHV3-9P01782 118 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 DLX6P56179 175 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 DTX1Q86Y01 620 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 VN1R2Q8NFZ6 395 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF296Q8WUU4 475 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-212ENST00000636194 SNX22Q96L94 193 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 MRGPRX3Q96LB0 322 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 WSB2Q9NYS7 404 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-212ENST00000636194 WNT16Q9UBV4 365 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 LAMB2P55268 1798 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 C17orf51A8MQB3 221 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 B3GALT4O96024 378 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 SLC37A1P57057 533 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 SIAH3Q8IW03 269 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 MORN4Q8NDC4 146 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 OR4A5Q8NH83 315 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 PRR7Q8TB68 274 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 FLRT3Q9NZU0 649 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 GDF2Q9UK05 429 aaPredicted RBP5.4□□□□□ -1.55
SCN1A-212ENST00000636194 WIPI2Q9Y4P8 454 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 BICRAQ9NZM4 1560 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 SLIT3O75094 1523 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 M0QYG6 137 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 TMPRSS2O15393 492 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 TCRBP04435 133 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 BSXQ3C1V8 233 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 OR1L8Q8NGR8 309 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 MVB12AQ96EY5 273 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 LIN28AQ9H9Z2 209 aaKnown RBP5.4□□□□□ -1.55
SCN1A-212ENST00000636194 INSIG2Q9Y5U4 225 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 NUP188Q5SRE5 1749 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 SBF1O95248 1867 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 SCN11AQ9UI33 1791 aa5.4□□□□□ -1.55
SCN1A-212ENST00000636194 CLPSL1A2RUU4 121 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 WTIPA6NIX2 430 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 AGFG2O95081 481 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CEACAM6P40199 344 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 OLIG2Q13516 323 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 PWWP2BQ6NUJ5 590 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 PARM1Q6UWI2 310 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF418Q8TF45 676 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 ZMAT3Q9HA38 289 aaKnown RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 TNRC6AQ8NDV7 1962 aaKnown RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 TRPM7Q96QT4 1865 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CXorf49A8MYA2 514 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 B4DEV8 164 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CTDSP2O14595 271 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 NKX2-2O95096 273 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CA1P00915 261 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 TFAP2AP05549 437 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CD27P26842 260 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 OR3A4PP47883 348 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CD81P60033 236 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 RPS20P60866 119 aaKnown RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 INSM1Q01101 510 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 PMP22Q01453 160 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 SKP2Q13309 424 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 ASAH1Q13510 395 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 LRRC75BQ2VPJ9 315 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 LEXMQ3ZCV2 418 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 SLC39A5Q6ZMH5 540 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 TMEFF1Q8IYR6 380 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 SELENOHQ8IZQ5 122 aaKnown RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 OR4C3Q8NH37 302 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 DCTN5Q9BTE1 182 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 SLC35B3Q9H1N7 401 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 GPR84Q9NQS5 396 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 MRPL16Q9NX20 251 aaKnown RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 CYSLTR1Q9Y271 337 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 MBD5Q9P267 1494 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 TRDV1A0A1B0GX56 115 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 TMEM102Q8N9M5 508 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-212ENST00000636194 SPPL3Q8TCT6 385 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 R3HDM4Q96D70 268 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 NEURL3Q96EH8 262 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 BANF2Q9H503 90 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 MMP26Q9NRE1 261 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 ATAD5Q96QE3 1844 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 ZNF541Q9H0D2 1346 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 A0A096LPE4 126 aa5.39□□□□□ -1.55
SCN1A-212ENST00000636194 A0A1W2PPZ6 126 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms