RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 BTN2A1Q7KYR7 527 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 TPRA1Q86W33 373 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 PPP1R35Q8TAP8 253 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 RAB40AQ8WXH6 277 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 MRPS24Q96EL2 167 aaKnown RBP15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 SNX22Q96L94 193 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 GFI1Q99684 422 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 NUDT16L1Q9BRJ7 211 aaKnown RBP15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 CST11Q9H112 138 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 ST3GAL6Q9Y274 331 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 IGHV2-70DA0A0C4DH43 119 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 J3QLI3 93 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 K7N7A8 449 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 SIRPB1O00241 398 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 CRTAPO75718 401 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 BPNT1O95861 308 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 OR2H2O95918 312 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 TK1P04183 234 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 HOXB4P17483 251 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 RBM11P57052 281 aaKnown RBP15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 PIGYQ3MUY2 71 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 NHLRC3Q5JS37 347 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 FAHD2BQ6P2I3 314 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 LINC00596Q86U02 117 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 FGFRL1Q8N441 504 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 CHST4Q8NCG5 386 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 OR5D13Q8NGL4 314 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 FAHD2AQ96GK7 314 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 MMP26Q9NRE1 261 aa15.84■□□□□ 0.13
SQSTM1-216ENST00000626660 SHISA3A0PJX4 238 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 C22orf46C9J442 243 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 ZNF737O75373 536 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 FCN3O75636 299 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 MGMTP16455 207 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 HNF1AP20823 631 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 P2RY14Q15391 338 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 GPR141Q7Z602 305 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 KCNG3Q8TAE7 436 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 C1orf147Q96MC9 270 aaPredicted RBP15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 DCTN5Q9BTE1 182 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 CENPOQ9BU64 300 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 FUNDC2Q9BWH2 189 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 SCOCQ9UIL1 159 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 RPUSD1Q9UJJ7 312 aaKnown RBP15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 INSIG2Q9Y5U4 225 aa15.83■□□□□ 0.12
SQSTM1-216ENST00000626660 NSD1Q96L73 2696 aaPredicted RBP15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 TRBV23-1A0A0A0MS06 115 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 KIR2DS1A0A191URI9 304 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 A0A1W2PP11 408 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 TMEM82A0PJX8 343 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 TFAP2AP05549 437 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 LIPFP07098 398 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 ARSBP15848 533 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 SDC2P34741 201 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 ALDH3B2P48448 385 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 OR10A3P58181 314 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 PAX2Q02962 417 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 GRK1Q15835 563 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 CR1LQ2VPA4 569 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 HES5Q5TA89 166 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 Q6P435 159 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 GDPD3Q7L5L3 318 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 OR8H2Q8N162 312 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 MRI1Q9BV20 369 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 SELENOIQ9C0D9 397 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 BANF2Q9H503 90 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 RNF167Q9H6Y7 350 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 TMEM160Q9NX00 188 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 STEAP1Q9UHE8 339 aa15.82■□□□□ 0.12
SQSTM1-216ENST00000626660 A0A1W2PQ09 198 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 IFITM5A6NNB3 132 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 NOTOA8MTQ0 251 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 OR7C1O76099 320 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 MPIG6BO95866 241 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 PPIAL4GP0DN37 164 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 VSIG8P0DPA2 414 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 LMO1P25800 156 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 PDCD1Q15116 288 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 MPV17LQ2QL34 196 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 PAN3Q58A45 887 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 C17orf107Q6ZR85 190 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 TMEM104Q8NE00 496 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 FAM46BQ96A09 425 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 SLC25A28Q96A46 364 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 TMEM59Q9BXS4 323 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 C7orf69Q9H7B7 122 aa15.81■□□□□ 0.12
SQSTM1-216ENST00000626660 NIPBLQ6KC79 2804 aaeCLIP15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 A0A0G2JK05 382 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 FUOMA2VDF0 154 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 SMIM30A4D0T7 59 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 H3BUI4 141 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 AIPO00170 330 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 SLC33A1O00400 549 aaPredicted RBP15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 MGST3O14880 152 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 GEMIN2O14893 280 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 PSPNO60542 156 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 RPL5P46777 297 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 CLDN12P56749 244 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 EDDM3BP56851 147 aa15.8■□□□□ 0.12
SQSTM1-216ENST00000626660 LSM3P62310 102 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms