RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TMEM158Q8WZ71 300 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 AJUBAQ96IF1 538 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 SNX22Q96L94 193 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 DUX5Q96PT3 197 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 C19orf24Q9BVV8 132 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 PRDM13Q9H4Q3 707 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 NOX4Q9NPH5 578 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 TMEM138Q9NPI0 162 aa9.13□□□□□ -0.95
VRK3-210ENST00000596121 A0A0G2JK05 382 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 A0A0U1RQK1 487 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 A0A1W2PRD5 423 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 A0A1W2PRF3 423 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 A0A1W2PRM7 423 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 M0R1W7 72 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 SC5DO75845 299 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 FSTP19883 344 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 PRTN3P24158 256 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 LMO1P25800 156 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 BDKRB2P30411 391 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 ZNF93P35789 620 aaPredicted RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 UBA52P62987 128 aaKnown RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 SCGB2A2Q13296 93 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 TPBGQ13641 420 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 SLC9A3R2Q15599 337 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 ACSM3Q53FZ2 586 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 SPIN3Q5JUX0 258 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 RBM48Q5RL73 367 aaKnown RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 DDI2Q5TDH0 399 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 GPR157Q5UAW9 335 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 LIPKQ5VXJ0 399 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 METAP1DQ6UB28 335 aaPredicted RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 OR8H2Q8N162 312 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 PXT1Q8NFP0 134 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 C17orf50Q8WW18 174 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 TAF15Q92804 592 aaKnown RBP eCLIP9.12□□□□□ -0.95
VRK3-210ENST00000596121 CYYR1Q96J86 154 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 NR1H4Q96RI1 486 aaPredicted RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 GPER1Q99527 375 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 ZNF184Q99676 751 aaPredicted RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 TMED9Q9BVK6 235 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 CCDC90BQ9GZT6 254 aa9.12□□□□□ -0.95
VRK3-210ENST00000596121 UNKLQ9H9P5 680 aaKnown RBP9.12□□□□□ -0.95
VRK3-210ENST00000596121 A0A1W2PP11 408 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 DNAJC9-AS1A6NH13 148 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 C17orf98A8MV24 154 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 SLC33A1O00400 549 aaPredicted RBP9.11□□□□□ -0.95
VRK3-210ENST00000596121 SH2D1BO14796 132 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 MAS1P04201 325 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 GABRR1P24046 479 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 MTNR1BP49286 362 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 RPS25P62851 125 aaKnown RBP9.11□□□□□ -0.95
VRK3-210ENST00000596121 PPP3R1P63098 170 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 SCN1BQ07699 218 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 BAMBIQ13145 260 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 EDDM3AQ14507 147 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 GRK1Q15835 563 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 PIGYQ3MUY2 71 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 TMEM91Q6ZNR0 172 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 LRRTM1Q86UE6 522 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 CMTM4Q8IZR5 234 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 OR51T1Q8NGJ9 327 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 TMEM203Q969S6 136 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 COQ2Q96H96 371 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 FAM192AQ9GZU8 254 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 METTL8Q9H825 291 aaKnown RBP9.11□□□□□ -0.95
VRK3-210ENST00000596121 RHOFQ9HBH0 211 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 EXOSC4Q9NPD3 245 aaKnown RBP9.11□□□□□ -0.95
VRK3-210ENST00000596121 ING4Q9UNL4 249 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 FOXJ3Q9UPW0 622 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 SF3B6Q9Y3B4 125 aaKnown RBP9.11□□□□□ -0.95
VRK3-210ENST00000596121 TENM1Q9UKZ4 2725 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 DSCAML1Q8TD84 2053 aa9.11□□□□□ -0.95
VRK3-210ENST00000596121 TRAV24A0A0B4J272 114 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 DEGS1O15121 323 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 MAGEB3O15480 346 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 HOXA3O43365 443 aaPredicted RBP9.1□□□□□ -0.95
VRK3-210ENST00000596121 MMP23AO75900 390 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 HTR3BO95264 441 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 HSMCR30P0CW71 290 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 GLIPR1P48060 266 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 EDDM3BP56851 147 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 BPIFB3P59826 476 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 GPR50Q13585 617 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 RSU1Q15404 277 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 Q6YL49 198 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 GDPD3Q7L5L3 318 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 CEACAM19Q7Z692 300 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 OR4D6Q8NGJ1 314 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 MUL1Q969V5 352 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 GFI1Q99684 422 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 MGLLQ99685 303 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 PPA2Q9H2U2 334 aa9.1□□□□□ -0.95
VRK3-210ENST00000596121 MGST3O14880 152 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 NPFFO15130 113 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 MELTFP08582 738 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 CD37P11049 281 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 ZNF44P15621 663 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 CPEP16870 476 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 PAX6P26367 422 aa9.09□□□□□ -0.95
VRK3-210ENST00000596121 GDNFP39905 211 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms