RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CADM4	Q8NFZ8	388 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	OR5C1	Q8NGR4	320 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	RAB24	Q969Q5	203 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	SGCZ	Q96LD1	299 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	FAM60A	Q9NP50	221 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	SLC2A9	Q9NRM0	540 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	KIF26A	Q9ULI4	1882 aa	Predicted RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	ALPK3	Q96L96	1907 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	hCG_1809904	A0A1W2PP81	198 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A1W2PR64	198 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A1W2PRV1	198 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	C5orf52	A6NGY3	159 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	DEGS1	O15121	323 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	MRPL33	O75394	65 aa	Known RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	PDGFB	P01127	241 aa	Predicted RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	SELE	P16581	610 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	FAH	P16930	419 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	CARD18	P57730	90 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	FAM3B	P58499	235 aa	Predicted RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	RPS15	P62841	145 aa	Known RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	HIST1H3A	P68431	136 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	EGR4	Q05215	589 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	ANKRD55	Q3KP44	614 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	OR2B11	Q5JQS5	317 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	CLEC9A	Q6UXN8	241 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF574	Q6ZN55	896 aa	Predicted RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	TMPRSS9	Q7Z410	1059 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	THNSL2	Q86YJ6	484 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF100	Q8IYN0	542 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	OR10G4	Q8NGN3	311 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	AKR7L	Q8NHP1	331 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	FRZB	Q92765	325 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	MRPL24	Q96A35	216 aa	Known RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	ADIPOR1	Q96A54	375 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	SPACA5	Q96QH8	159 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	AMELY	Q99218	206 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	NRTN	Q99748	197 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	GPR87	Q9BY21	358 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	VN1R1	Q9GZP7	353 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	GSN-AS1	Q9NRJ2	163 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	LYRM2	Q9NU23	88 aa	Predicted RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	PSENEN	Q9NZ42	101 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	CA14	Q9ULX7	337 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	AMDHD2	Q9Y303	409 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	MTCH2	Q9Y6C9	303 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	URGCP-MRPS24	S4R325	110 aa		3.11	□□□□□ -1.91
VMP1-216	ENST00000592790	HELZ	P42694	1942 aa	Known RBP	3.11	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A087X0M5	115 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A1B0GX30	115 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PMS2P1	A4D2B8	440 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PRR19	A6NJB7	356 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790		G3V3Q6	166 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	CBR3	O75828	277 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	CRYAB	P02511	175 aa	Known RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	JMJD7	P0C870	316 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	FABP4	P15090	132 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF708	P17019	499 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF17	P17021	662 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	GABRG2	P18507	467 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	CCNO	P22674	350 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	OPRM1	P35372	400 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	TPPP2	P59282	170 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	TGFBR3	Q03167	851 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF528	Q3MIS6	628 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PDLIM3	Q53GG5	364 aa	Predicted RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	SLC25A47	Q6Q0C1	308 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	DGAT2L6	Q6ZPD8	337 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	RPS19BP1	Q86WX3	136 aa	Known RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	FAM219A	Q8IW50	185 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	ZDHHC23	Q8IYP9	409 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	D2HGDH	Q8N465	521 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM217	Q8N7C4	229 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	LRTM2	Q8N967	370 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	ZBTB34	Q8NCN2	500 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	OR10P1	Q8NGE3	313 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	MOB3A	Q96BX8	217 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	MSI2	Q96DH6	328 aa	Known RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	GMPPA	Q96IJ6	420 aa	Predicted RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PACRG	Q96M98	296 aa	Predicted RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	LRRC3B	Q96PB8	259 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	SAMD10	Q9BYL1	202 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	STRADB	Q9C0K7	418 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PARP12	Q9H0J9	701 aa	Known RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	NOTCH2	Q04721	2471 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM265	A0A087WTH1	108 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790		F6UZH7	168 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	DVL1	O14640	695 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	CYTIP	O60759	359 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	CLDN1	O95832	211 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	EML2	O95834	649 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	IGKV3-11	P04433	115 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PF4V1	P10720	104 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	HLA-DOB	P13765	273 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	HOXA5	P20719	270 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	AGA	P20933	346 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	CCL1	P22362	96 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	SRP14	P37108	136 aa	Known RBP	3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	GLIPR1	P48060	266 aa		3.1	□□□□□ -1.91
VMP1-216	ENST00000592790	PPP1CB	P62140	327 aa		3.1	□□□□□ -1.91

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