RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PRDX4Q13162 271 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 PXDC1Q5TGL8 231 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 CTRB2Q6GPI1 263 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 TMED6Q8WW62 240 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 RTN4IP1Q8WWV3 396 aaPredicted RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 MRPL24Q96A35 216 aaKnown RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 APH1AQ96BI3 265 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 IP6K3Q96PC2 410 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 PAPOLGQ9BWT3 736 aaKnown RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 KMT2EQ8IZD2 1858 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A10PA6NDY2 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A18PA6NE21 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A16PA6NEW6 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A20PA6NIJ5 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A8PA6NJQ4 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A7PA6NKC0 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A22PA8MWA6 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A12PA8MX19 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A5PA8MXJ8 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A23PA8MXZ1 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 TAAR5O14804 337 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 NME2P1O60361 137 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 SS18L1O75177 396 aaPredicted RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 CST4P01036 141 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A15PP0C7V4 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A13PP0C7W8 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A14PP0C7W9 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM90A24PP0C7X0 464 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 NME2P22392 152 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 MEOX1P50221 254 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 UCP3P55916 312 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FXYD4P59646 89 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 TMEM187Q14656 261 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 RNPS1Q15287 305 aaKnown RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 ABCA11PQ4W5N1 156 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 C1orf185Q5T7R7 199 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 DHRS13Q6UX07 377 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FOXRED2Q8IWF2 684 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 MDS2Q8NDY4 140 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 HPSE2Q8WWQ2 592 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 APOBEC3DQ96AK3 386 aaPredicted RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 MOB3AQ96BX8 217 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FGF23Q9GZV9 251 aaPredicted RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 ZNF442Q9H7R0 627 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 CRIM1Q9NZV1 1036 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 STARD10Q9Y365 291 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 ZNHIT1O43257 154 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 DEDDO75618 318 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 TNFSF15O95150 251 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 OR5AC1P0C628 307 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 ARR3P36575 388 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 RAB1AP62820 205 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 CEACAM21Q3KPI0 293 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 SP6Q3SY56 376 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 ATRAIDQ6UW56 229 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 MRPL21Q7Z2W9 205 aaKnown RBP8.67□□□□□ -1.02
VPS53-220ENST00000576149 TMEM200AQ86VY9 491 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 ZDHHC23Q8IYP9 409 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 SAXO1Q8IYX7 474 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 LRTM2Q8N967 370 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 BOLLQ8N9W6 283 aaKnown RBP8.67□□□□□ -1.02
VPS53-220ENST00000576149 AIFM2Q9BRQ8 373 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 SUCNR1Q9BXA5 334 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 SLC2A9Q9NRM0 540 aa8.67□□□□□ -1.02
VPS53-220ENST00000576149 KLF13Q9Y2Y9 288 aaPredicted RBP8.67□□□□□ -1.02
VPS53-220ENST00000576149 KLRC4-KLRK1H3BQV0 150 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 K7EPK0 472 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 BCL3P20749 454 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 GLP1RP43220 463 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 SSTP61278 116 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 EIF5AP63241 154 aaKnown RBP8.66□□□□□ -1.02
VPS53-220ENST00000576149 C3AR1Q16581 482 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 NUFIP2Q7Z417 695 aaKnown RBP8.66□□□□□ -1.02
VPS53-220ENST00000576149 BATF2Q8N1L9 274 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 FAM71E2Q8N5Q1 922 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 POM121L2Q96KW2 1035 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 FER1L6-AS2Q96M78 137 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 OR2S2Q9NQN1 319 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 NUDT19A8MXV4 375 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 PRSS44E7EML9 344 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 TSPAN4O14817 238 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 SIGLEC5O15389 551 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 ACTL6AO96019 429 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 NGFP01138 241 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 AADACP22760 399 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 RPL12P30050 165 aaKnown RBP8.66□□□□□ -1.02
VPS53-220ENST00000576149 GPM6AP51674 278 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 FGF12P61328 243 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 RPP30P78346 268 aaKnown RBP8.66□□□□□ -1.02
VPS53-220ENST00000576149 ZNF273Q14593 569 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 SMCO1Q147U7 214 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 ZNF674Q2M3X9 581 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 PHLDA2Q53GA4 152 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 HES3Q5TGS1 186 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 RPL7L1Q6DKI1 246 aaKnown RBP8.66□□□□□ -1.02
VPS53-220ENST00000576149 OR2A2Q6IF42 318 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 LIAT1Q6ZQX7 453 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 Q6ZS49 121 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 LHFPL5Q8TAF8 219 aa8.66□□□□□ -1.02
VPS53-220ENST00000576149 GLYATL2Q8WU03 294 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms