RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 TMEM38BQ9NVV0 291 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 SLC7A11Q9UPY5 501 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 CEP192Q8TEP8 1941 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 LOC102723996A0A087X1L8 192 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 IGHV1-45A0A0A0MS14 117 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 C3orf85A0A1B0GTC6 90 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 NKX2-6A6NCS4 301 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 LINC00587B1AMM8 73 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 K7N7A8 449 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 GPR37O15354 613 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 MPPED1O15442 326 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 FUT6P51993 359 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 SOHLH1Q5JUK2 328 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 Q6ZPA2 131 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 NTNG2Q96CW9 530 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 DUSP23Q9BVJ7 150 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 GSN-AS1Q9NRJ2 163 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 PUS1Q9Y606 427 aaKnown RBP eCLIP13.53□□□□□ -0.24
NUP88-207ENST00000573584 SDK2Q58EX2 2172 aa13.53□□□□□ -0.24
NUP88-207ENST00000573584 LY6G6EA0A0G2JKS1 128 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 PPYP01298 95 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 NQO2P16083 231 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 SSR4P51571 173 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 OR2G3Q8NGZ4 309 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 PIGCQ92535 297 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 ALKBH3Q96Q83 286 aaPredicted RBP13.52□□□□□ -0.24
NUP88-207ENST00000573584 SF3B5Q9BWJ5 86 aaKnown RBP13.52□□□□□ -0.24
NUP88-207ENST00000573584 RFNGQ9Y644 331 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 U3KQA8 63 aa13.52□□□□□ -0.24
NUP88-207ENST00000573584 OR6C6A6NF89 314 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 OR7C1O76099 320 aaPredicted RBP13.52□□□□□ -0.25
NUP88-207ENST00000573584 IGHV2-5P01817 119 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 FUT3P21217 361 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 ITGA3P26006 1051 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 ZNF92Q03936 586 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 IGSF11Q5DX21 431 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 PLCXD3Q63HM9 321 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 TMEM211Q6ICI0 200 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 BATF2Q8N1L9 274 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 SUMF2Q8NBJ7 301 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 SUMF1Q8NBK3 374 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 IMMP1LQ96LU5 166 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 TCEAL7Q9BRU2 100 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 WDR54Q9H977 334 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 P4HTMQ9NXG6 502 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 IL36GQ9NZH8 169 aa13.52□□□□□ -0.25
NUP88-207ENST00000573584 CBR3O75828 277 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 CDS2O95674 445 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 OMGP23515 440 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 POLR2GP62487 172 aaKnown RBP eCLIP13.51□□□□□ -0.25
NUP88-207ENST00000573584 RAB1AP62820 205 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 PSG4Q00888 419 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 ZNF266Q14584 549 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 A0A1B0GW64 132 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 GJE1A6NN92 205 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 CYC1P08574 325 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 ATP6V0CP27449 155 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 EPHA8P29322 1005 aaPredicted RBP13.51□□□□□ -0.25
NUP88-207ENST00000573584 NKX2-1P43699 371 aaPredicted RBP13.51□□□□□ -0.25
NUP88-207ENST00000573584 RBM11P57052 281 aaKnown RBP13.51□□□□□ -0.25
NUP88-207ENST00000573584 RAC3P60763 192 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 CCL20P78556 96 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 SPEM1Q8N4L4 309 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 OR14L1PQ8NHC6 308 aa13.51□□□□□ -0.25
NUP88-207ENST00000573584 SNIP1Q8TAD8 396 aaKnown RBP13.51□□□□□ -0.25
NUP88-207ENST00000573584 PTRH2Q9Y3E5 179 aaKnown RBP13.51□□□□□ -0.25
NUP88-207ENST00000573584 TRDCB7Z8K6 153 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 UMODP07911 640 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 OR8U8P0C7N1 319 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 COX6A1P12074 109 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 GNRHRP30968 328 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 SRPXP78539 464 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 OR8B8Q15620 311 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 EXT1Q16394 746 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 ZFP62Q8NB50 900 aaPredicted RBP13.5□□□□□ -0.25
NUP88-207ENST00000573584 CPT1CQ8TCG5 803 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 SLAMF9Q96A28 289 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 MALSU1Q96EH3 234 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 ABHD14AQ9BUJ0 271 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 TMEM222Q9H0R3 208 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 ZNF391Q9UJN7 358 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 UBE2J1Q9Y385 318 aaPredicted RBP13.5□□□□□ -0.25
NUP88-207ENST00000573584 hCG_38984A0A1B0GV85 526 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 IGSF23A1L1A6 192 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 OR2C1O95371 312 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 CARD18P57730 90 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 SPIN3Q5JUX0 258 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 CALHM1Q8IU99 346 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 ZNF695Q8IW36 515 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 PAPOLGQ9BWT3 736 aaKnown RBP13.5□□□□□ -0.25
NUP88-207ENST00000573584 SMDT1Q9H4I9 107 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 CDRT15L2A8MXV6 281 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 AP4M1O00189 453 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 TXNL1O43396 289 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 RPS23P62266 143 aaKnown RBP13.5□□□□□ -0.25
NUP88-207ENST00000573584 AAED1Q7RTV5 226 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 YRDCQ86U90 279 aaKnown RBP13.5□□□□□ -0.25
NUP88-207ENST00000573584 RPS19BP1Q86WX3 136 aaKnown RBP13.5□□□□□ -0.25
NUP88-207ENST00000573584 ZNF100Q8IYN0 542 aa13.5□□□□□ -0.25
NUP88-207ENST00000573584 FGFBP3Q8TAT2 258 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms