RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-215	ENST00000566843	TRGC2	P03986	189 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	CEACAM1	P13688	526 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	ENDOG	Q14249	297 aa	Known RBP	13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	RSU1	Q15404	277 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	TAF9	Q16594	264 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	FOXL2NB	Q6ZUU3	175 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	ARL6IP6	Q8N6S5	226 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	GJC3	Q8NFK1	279 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	OR5L2	Q8NGL0	311 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	OR11L1	Q8NGX0	322 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	LMX1A	Q8TE12	382 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	TMEM171	Q8WVE6	324 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	NIPSNAP3B	Q9BS92	247 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	SLC25A31	Q9H0C2	315 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	ZNF581	Q9P0T4	197 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	FOXD3	Q9UJU5	478 aa	Predicted RBP	13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	CYP8B1	Q9UNU6	501 aa		13.61	□□□□□ -0.23
COMMD4-215	ENST00000566843	DNAH14	Q0VDD8	3507 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843		A0A1B0GV90	55 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843		A0A1B0GX78	115 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843		A0A1W2PNR3	127 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	CYB5B	O43169	146 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	MSR1	P21757	451 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	PTGDS	P41222	190 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	GAMT	Q14353	236 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	C1orf189	Q5VU69	101 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	SSX9	Q7RTT3	188 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	CLDND2	Q8NHS1	167 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	ABHD5	Q8WTS1	349 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	SPSB1	Q96BD6	273 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	RBMXL1	Q96E39	390 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	RCC1L	Q96I51	464 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	LYRM2	Q9NU23	88 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	B3GALT1	Q9Y5Z6	326 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	NCOA6	Q14686	2063 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	NKX2-6	A6NCS4	301 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843		F5H5K5	113 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	SRF	P11831	508 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	DDT	P30046	118 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	RND2	P52198	227 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	MTCP1	P56278	107 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	SRPX	P78539	464 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	SLC22A25	Q6T423	547 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	DPPA3	Q6W0C5	159 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	TMEM252	Q8N6L7	170 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	S100PBP	Q96BU1	408 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	GNPNAT1	Q96EK6	184 aa	Predicted RBP	13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	TP53RK	Q96S44	253 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	ZNF700	Q9H0M5	742 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	CA14	Q9ULX7	337 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	PTRH2	Q9Y3E5	179 aa	Known RBP	13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	URGCP-MRPS24	S4R325	110 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	FER1L5	A0AVI2	2057 aa		13.6	□□□□□ -0.23
COMMD4-215	ENST00000566843	AQP7P3	A6NL99	342 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	PHOX2A	O14813	284 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	SLC31A2	O15432	143 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	TLX3	O43711	291 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	HBE1	P02100	147 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	OPN1LW	P04000	364 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	TRGC1	P0CF51	173 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	RNF224	P0DH78	156 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	GLI4	P10075	376 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	NKX2-1	P43699	371 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	C10orf128	Q5T292	105 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	OR2T2	Q6IF00	324 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	STX12	Q86Y82	276 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	ODF3L1	Q8IXM7	274 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	CARF	Q8N187	725 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	GPR173	Q9NS66	373 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	TMEM242	Q9NWH2	141 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	KLRF1	Q9NZS2	232 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	KNL1	Q8NG31	2342 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	PROB1	E7EW31	1015 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	NR2C1	P13056	603 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	ARL4D	P49703	201 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	HLA-DRB3	P79483	266 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	THAP3	Q8WTV1	239 aa	Predicted RBP	13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	FRZB	Q92765	325 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	TMEM56	Q96MV1	263 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	ZNF286A	Q9HBT8	521 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	GLRX2	Q9NS18	164 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	TMEM56-RWDD3	S4R434	201 aa		13.59	□□□□□ -0.23
COMMD4-215	ENST00000566843	TRAV1-1	A0A0B4J248	108 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	C3orf85	A0A1B0GTC6	90 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	LOC102723971	A0A1B0GUV8	181 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	MPPED1	O15442	326 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	ANGPTL7	O43827	346 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	MMP9	P14780	707 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	FOLR1	P15328	257 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	PNLIP	P16233	465 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	BEND4	Q6ZU67	534 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	ZNF100	Q8IYN0	542 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	FAM185A	Q8N0U4	392 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	OR10AD1	Q8NGE0	317 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	OR5R1	Q8NH85	324 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	TMEM54	Q969K7	222 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	NABP1	Q96AH0	204 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	FAM210B	Q96KR6	192 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	TMEM222	Q9H0R3	208 aa		13.58	□□□□□ -0.24
COMMD4-215	ENST00000566843	IGKV1-27	A0A075B6S5	117 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms