RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CPT1CQ8TCG5 803 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ISOC2Q96AB3 205 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ADGRG7Q96K78 797 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 IP6K3Q96PC2 410 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 SF3B5Q9BWJ5 86 aaKnown RBP11.11□□□□□ -0.63
LDLR-207ENST00000558013 MAGT1Q9H0U3 335 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ZFP57Q9NU63 452 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 EDARQ9UNE0 448 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 BDP1A6H8Y1 2624 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 RAB13P51153 203 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 PPA1Q15181 289 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 TRIM61Q5EBN2 209 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 FBXW12Q6X9E4 464 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 LIAT1Q6ZQX7 453 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 LHFPL2Q6ZUX7 228 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 RAB11FIP2Q7L804 512 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 IQCF2Q8IXL9 164 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 SLAMF9Q96A28 289 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 PAPOLGQ9BWT3 736 aaKnown RBP11.11□□□□□ -0.63
LDLR-207ENST00000558013 BCO1Q9HAY6 547 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 EIF3IQ13347 325 aaKnown RBP11.11□□□□□ -0.63
LDLR-207ENST00000558013 CLINT1Q14677 625 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 SWI5Q1ZZU3 235 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 EIF5AL1Q6IS14 154 aaKnown RBP11.11□□□□□ -0.63
LDLR-207ENST00000558013 ASCL4Q6XD76 172 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 DMBX1Q8NFW5 382 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 OR2V1Q8NHB1 315 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 C18orf12Q96KH6 178 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ABHD14AQ9BUJ0 271 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 PRRG4Q9BZD6 226 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 PARP11Q9NR21 331 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ZNF175Q9Y473 711 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 MED13Q9UHV7 2174 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 NKX2-6A6NCS4 301 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 COLCA2A8K830 154 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 MMP7P09237 267 aaPredicted RBP11.1□□□□□ -0.63
LDLR-207ENST00000558013 SCTP09683 121 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 BCL3P20749 454 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 DTYMKP23919 212 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 RBM11P57052 281 aaKnown RBP11.1□□□□□ -0.63
LDLR-207ENST00000558013 PEA15Q15121 130 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 TSC22D1Q15714 1073 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 OR56B2PQ8NGI1 322 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 SGCZQ96LD1 299 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 USB1Q9BQ65 265 aaKnown RBP11.1□□□□□ -0.63
LDLR-207ENST00000558013 OR51B6Q9H340 312 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 SLC7A10Q9NS82 523 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 CACFD1Q9UGQ2 172 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 TCFL5Q9UL49 500 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 FAM24AA6NFZ4 105 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 GJE1A6NN92 205 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 PDCD6O75340 191 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 TSPAN15O95858 294 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 GNRHRP30968 328 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 GPM6AP51674 278 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 MALLQ13021 153 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 RTL6Q6ICC9 239 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 UBAC2Q8NBM4 344 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 GALNT14Q96FL9 552 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 SCRT1Q9BWW7 348 aa11.1□□□□□ -0.63
LDLR-207ENST00000558013 E5RGE8 158 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 NGFP01138 241 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 PPYP01298 95 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 FUT6P51993 359 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 POLR2GP62487 172 aaKnown RBP eCLIP11.09□□□□□ -0.63
LDLR-207ENST00000558013 KRTAP27-1Q3LI81 207 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 HPSE2Q8WWQ2 592 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 MOB3AQ96BX8 217 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 C14orf79Q96F83 325 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 ZNF488Q96MN9 340 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 EIF5A2Q9GZV4 153 aaKnown RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 ZNF286AQ9HBT8 521 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 SLC7A11Q9UPY5 501 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 NSG2Q9Y328 171 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 NUDT19A8MXV4 375 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 H7C1Q1 480 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 TNFSF12O43508 249 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 GAPDHP04406 335 aaKnown RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 SNRNP70P08621 437 aaKnown RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 HAAOP46952 286 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 DVL1P1P54792 670 aaPredicted RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 EIF5AP63241 154 aaKnown RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 ARF1P84077 181 aaKnown RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 ZXDAP98168 799 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 SPIN3Q5JUX0 258 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 VASH2Q86V25 355 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 RPS10P5Q9NQ39 176 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 FBXO7Q9Y3I1 522 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 IGKV1D-13A0A0B4J2D9 117 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 C5orf49A4QMS7 147 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 LILRA1O75019 489 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 PRH1P02810 166 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 IGKV1-13P0DP09 117 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 CBR1P16152 277 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 FUT3P21217 361 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 PPP1CCP36873 323 aaKnown RBP11.09□□□□□ -0.63
LDLR-207ENST00000558013 ECI1P42126 302 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 OR8B8Q15620 311 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 C3AR1Q16581 482 aa11.09□□□□□ -0.63
LDLR-207ENST00000558013 CXorf66Q5JRM2 361 aaPredicted RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms