RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 HSPB1P04792 205 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 RRASP10301 218 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 OGNP20774 298 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 MMP11P24347 488 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 HLA-DMAP28067 261 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 NPBWR2P48146 333 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 EIF2B2P49770 351 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ATP5J2P56134 94 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 RIPPLY3P57055 190 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 KCNK10P57789 538 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 CDC42P60953 191 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 RAP1BP61224 184 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 DCDP81605 110 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 MYBPC1Q00872 1141 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF45Q02386 682 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 KCNJ11Q14654 390 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 TRAM2Q15035 370 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ARL6IP1Q15041 203 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 SLC9A3R2Q15599 337 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 TRIP10Q15642 601 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 PRAMEF7Q5VXH5 474 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 RNASEKQ6P5S7 137 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ASCL4Q6XD76 172 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 MBOAT1Q6ZNC8 495 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 GDPD3Q7L5L3 318 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 PRSS41Q7RTY9 318 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 MRPL21Q7Z2W9 205 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 LYG2Q86SG7 212 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF546Q86UE3 836 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 RAB43Q86YS6 212 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 CRLF3Q8IUI8 442 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 HS3ST5Q8IZT8 346 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 PUSL1Q8N0Z8 303 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 RIBC1Q8N443 379 aaPredicted RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ST6GALNAC3Q8NDV1 305 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 STXBP6Q8NFX7 210 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 OR2A1Q8NGT9 310 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 C1orf54Q8WWF1 131 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 UFD1Q92890 307 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 AKR1E2Q96JD6 320 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 NOL4LQ96MY1 436 aaPredicted RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 C20orf24Q9BUV8 137 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 SIRPDQ9H106 197 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 WDR55Q9H6Y2 383 aaPredicted RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ANKRA2Q9H9E1 313 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 IFT46Q9NQC8 304 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 BABAM2Q9NXR7 383 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 TREM2Q9NZC2 230 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 VAPAQ9P0L0 249 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 MRM2Q9UI43 246 aaKnown RBP3.21□□□□□ -1.9
PRPF39-209ENST00000556353 USH1CQ9Y6N9 552 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 USF3Q68DE3 2245 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.21□□□□□ -1.93e-9■■■■□ 19.6
PRPF39-209ENST00000556353 TRRAPQ9Y4A5 3859 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 ABCA1O95477 2261 aa3.21□□□□□ -1.9
PRPF39-209ENST00000556353 IGHV1-45A0A0A0MS14 117 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 A0A1W2PNV4 684 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 C4orf51C9J302 202 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 PPIAL4DF5H284 164 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 H0YGG7 62 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 SMLR1H3BR10 107 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 C19orf84I3L1E1 186 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 PSMD12O00232 456 aaPredicted RBP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 ZNF861PO60384 105 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 RAMP3O60896 148 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 BANF1O75531 89 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 SULT1C4O75897 302 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 SERF1AO75920 110 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 OR4F21O95013 312 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 TSPAN12O95859 305 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 CDK1P06493 297 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 SERPINE2P07093 398 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 APRTP07741 180 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 OR56A5P0C7T3 313 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 CT45A8P0DMV1 189 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 CT45A9P0DMV2 189 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 GTF2F2P13984 249 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 ZP3P21754 424 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 PAICSP22234 425 aaKnown RBP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 RPS3P23396 243 aaKnown RBP eCLIP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 GABRR1P24046 479 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 PRDX6P30041 224 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 IL2RGP31785 369 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 KDELR2P33947 212 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 RPL22P35268 128 aaKnown RBP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 UGT2B10P36537 528 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 CEACAM3P40198 252 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 MAP3K8P41279 467 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 MAGEA12P43365 314 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 RPL5P46777 297 aaKnown RBP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 PPOXP50336 477 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 TNFSF10P50591 281 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 VSX2P58304 361 aaPredicted RBP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 NAA20P61599 178 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 MRPS22P82650 360 aaKnown RBP3.2□□□□□ -1.9
PRPF39-209ENST00000556353 CDKL1Q00532 357 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 PRPSAP1Q14558 356 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 POU2AF1Q16633 256 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 ADPRMQ3LIE5 342 aa3.2□□□□□ -1.9
PRPF39-209ENST00000556353 CT45A2Q5DJT8 189 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms