RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PSPNO60542 156 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 OR2H2O95918 312 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 ZNF44P15621 663 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 GABRR1P24046 479 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 PSMA1P25786 263 aaKnown RBP11.62□□□□□ -0.55
PTCH1-226ENST00000553011 PSMB9P28065 219 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 RPL31P62899 125 aaKnown RBP11.62□□□□□ -0.55
PTCH1-226ENST00000553011 TRAM1Q15629 374 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 METTL11BQ5VVY1 283 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 Q6P435 159 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 OR8H2Q8N162 312 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 OR4S1Q8NGB4 309 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 OR4D6Q8NGJ1 314 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 C22orf15Q8WYQ4 148 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 SNX22Q96L94 193 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 METTL9Q9H1A3 318 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 GLS2Q9UI32 602 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 MRPS28Q9Y2Q9 187 aaKnown RBP11.62□□□□□ -0.55
PTCH1-226ENST00000553011 CUBNO60494 3623 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 MEX3AA1L020 520 aaKnown RBP11.61□□□□□ -0.55
PTCH1-226ENST00000553011 MEGF11A6BM72 1044 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 IFNA2P01563 188 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 SRMP19623 302 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 SERPINA2P20848 420 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 OR3A1P47881 315 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 BMXP51813 675 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 DLX1P56177 255 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 EDDM3BP56851 147 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 PRB3Q04118 309 aaPredicted RBP11.61□□□□□ -0.55
PTCH1-226ENST00000553011 EDDM3AQ14507 147 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 ZNF273Q14593 569 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 GRK1Q15835 563 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 PIGYQ3MUY2 71 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 SLC22A6Q4U2R8 563 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 TMEM200BQ69YZ2 307 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 GLIPR1L1Q6UWM5 242 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 GDPD3Q7L5L3 318 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 VMO1Q7Z5L0 202 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 CDH26Q8IXH8 852 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 KIR3DL3Q8N743 410 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 Q8N7P7 452 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 NKAIN3Q8N8D7 197 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 Q8NFD4 153 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 OR51T1Q8NGJ9 327 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 PHYHIPQ92561 330 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 FCGR1BQ92637 280 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 DMRTB1Q96MA1 342 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 S100A13Q99584 98 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 OCEL1Q9H607 264 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 SIRT7Q9NRC8 400 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 NDUFB11Q9NX14 153 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 IL36GQ9NZH8 169 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 ZNF69Q9UC07 566 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 NUP50Q9UKX7 468 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 SOX21Q9Y651 276 aaPredicted RBP11.61□□□□□ -0.55
PTCH1-226ENST00000553011 KPTNQ9Y664 436 aa11.61□□□□□ -0.55
PTCH1-226ENST00000553011 A0A0G2JK05 382 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 SLC33A1O00400 549 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-226ENST00000553011 DEGS1O15121 323 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 LMO1P25800 156 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 CALRP27797 417 aaKnown RBP11.6□□□□□ -0.55
PTCH1-226ENST00000553011 SRSF2Q01130 221 aaKnown RBP11.6□□□□□ -0.55
PTCH1-226ENST00000553011 IL13RA2Q14627 380 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 AWAT2Q6E213 333 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 PDZD9Q8IXQ8 264 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 CMTM4Q8IZR5 234 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 BCL6BQ8N143 479 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-226ENST00000553011 OSR2Q8N2R0 312 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 TPRX1Q8N7U7 411 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 OR5D13Q8NGL4 314 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 C1orf147Q96MC9 270 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-226ENST00000553011 SLC6A7Q99884 636 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 PPA2Q9H2U2 334 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 ZNF581Q9P0T4 197 aa11.6□□□□□ -0.55
PTCH1-226ENST00000553011 CCRL2O00421 344 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 MGST3O14880 152 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 ARL6IP5O75915 188 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 CSTBP04080 98 aaKnown RBP11.59□□□□□ -0.55
PTCH1-226ENST00000553011 CCL3L1P16619 93 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 RBM11P57052 281 aaKnown RBP11.59□□□□□ -0.55
PTCH1-226ENST00000553011 NEDD8Q15843 81 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 RUSC1-AS1Q66K80 236 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 GLT8D1Q68CQ7 371 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 BRD3OSQ6XYD6 125 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 TCF23Q7RTU1 214 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 CHST4Q8NCG5 386 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 PPP1R35Q8TAP8 253 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 TBC1D15Q8TC07 691 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 LHX4Q969G2 390 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 GFI1Q99684 422 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 UQCC2Q9BRT2 126 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 SLITRK2Q9H156 845 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 ST3GAL6Q9Y274 331 aa11.59□□□□□ -0.55
PTCH1-226ENST00000553011 TRAV24A0A0B4J272 114 aa11.58□□□□□ -0.56
PTCH1-226ENST00000553011 CENPVL3A0A0U1RRI6 287 aa11.58□□□□□ -0.56
PTCH1-226ENST00000553011 TRDV1A0A1B0GX56 115 aa11.58□□□□□ -0.56
PTCH1-226ENST00000553011 M0R1W7 72 aa11.58□□□□□ -0.56
PTCH1-226ENST00000553011 HSPB6O14558 160 aa11.58□□□□□ -0.56
PTCH1-226ENST00000553011 GEMIN2O14893 280 aaKnown RBP11.58□□□□□ -0.56
PTCH1-226ENST00000553011 ZNF780AO75290 641 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms