RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 OR2W3Q7Z3T1 314 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 MED30Q96HR3 178 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 TMEM59Q9BXS4 323 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 BARHL1Q9BZE3 327 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 OR5V1Q9UGF6 321 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 DPPA5A6NC42 116 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 DVL1O14640 695 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 LDLRAD4O15165 306 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 PHF1O43189 567 aaPredicted RBP17.62■□□□□ 0.41
VPS29-206ENST00000549578 PAHP00439 452 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 CHRM2P08172 466 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 TMEM249Q2WGJ8 235 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 ESCO2Q56NI9 601 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 ZNF561Q8N587 486 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 ASCC1Q8N9N2 400 aaKnown RBP17.62■□□□□ 0.41
VPS29-206ENST00000549578 TMEM185AQ8NFB2 350 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 Q96M66 194 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 LPAR2Q9HBW0 351 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 CLN8Q9UBY8 286 aa17.62■□□□□ 0.41
VPS29-206ENST00000549578 ACANP16112 2415 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 YLPM1P49750 1951 aaKnown RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 MALRD1Q5VYJ5 2156 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 TMEM82A0PJX8 343 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 DEGS1O15121 323 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 NDUFB3O43676 98 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 ZNF737O75373 536 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 OR7C1O76099 320 aaPredicted RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 GABRR1P24046 479 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 GNB2P62879 340 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 RPS27AP62979 156 aaKnown RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 WDR25Q64LD2 544 aaPredicted RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 CROCCP3Q8IVE0 287 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 LGALS14Q8TCE9 139 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 ST8SIA4Q92187 359 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 SSBP3Q9BWW4 388 aaPredicted RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 SEBOXQ9HB31 216 aaPredicted RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 FBLN5Q9UBX5 448 aa17.61■□□□□ 0.41
VPS29-206ENST00000549578 RSL24D1Q9UHA3 163 aaKnown RBP17.61■□□□□ 0.41
VPS29-206ENST00000549578 PSPNO60542 156 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 ZFP36P26651 326 aaKnown RBP17.6■□□□□ 0.41
VPS29-206ENST00000549578 RANBP1P43487 201 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 EFNB2P52799 333 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 LCN2P80188 198 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 C17orf107Q6ZR85 190 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 NICN1Q9BSH3 213 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 CHST6Q9GZX3 395 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 LPAR5Q9H1C0 372 aa17.6■□□□□ 0.41
VPS29-206ENST00000549578 SLC25A10Q9UBX3 287 aaPredicted RBP17.6■□□□□ 0.41
VPS29-206ENST00000549578 SMIM31A0A1B0GVY4 71 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 SLC33A1O00400 549 aaPredicted RBP17.59■□□□□ 0.41
VPS29-206ENST00000549578 HSPB6O14558 160 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 IGHV4-31P0DP07 118 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 CPT2P23786 658 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 MPV17LQ2QL34 196 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 LRRC10Q5BKY1 277 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 LINC00596Q86U02 117 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 OR5H6Q8NGV6 325 aa17.59■□□□□ 0.41
VPS29-206ENST00000549578 ARHGAP32A7KAX9 2087 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 DOCK11Q5JSL3 2073 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 A0A0A6YYD4 124 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 TRAV24A0A0B4J272 114 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 KIAA1324LA8MWY0 1029 aaPredicted RBP17.58■□□□□ 0.41
VPS29-206ENST00000549578 K7N7A8 449 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 TK1P04183 234 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 NDUFB7P17568 137 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 LMO1P25800 156 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 RORCP51449 518 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 CHST4Q8NCG5 386 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 OR4S1Q8NGB4 309 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 C1orf159Q96HA4 380 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 C18orf12Q96KH6 178 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 TM2D1Q9BX74 207 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 SHARPINQ9H0F6 387 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 PPA2Q9H2U2 334 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 RAB22AQ9UL26 194 aa17.58■□□□□ 0.41
VPS29-206ENST00000549578 OR3A1P47881 315 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 NPY4RP50391 375 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 ATAD3CQ5T2N8 411 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 FOXB2Q5VYV0 432 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 SIGIRRQ6IA17 410 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 BRICD5Q6PL45 260 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 DYNC2LI1Q8TCX1 351 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 MSI2Q96DH6 328 aaKnown RBP17.57■□□□□ 0.4
VPS29-206ENST00000549578 CYYR1Q96J86 154 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 SNX22Q96L94 193 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 URM1Q9BTM9 101 aaKnown RBP17.57■□□□□ 0.4
VPS29-206ENST00000549578 TMUB1Q9BVT8 246 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 HIVEP1P15822 2718 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 A8MXK9 166 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 FOXH1O75593 365 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 CD99P14209 185 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 GRK1Q15835 563 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 PAN3Q58A45 887 aaKnown RBP17.57■□□□□ 0.4
VPS29-206ENST00000549578 BIVMQ86UB2 503 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 OR8H2Q8N162 312 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 BPIFB2Q8N4F0 458 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 LINC01356Q8N9X3 169 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 SUMF2Q8NBJ7 301 aa17.57■□□□□ 0.4
VPS29-206ENST00000549578 H1FXQ92522 213 aaKnown RBP17.57■□□□□ 0.4
VPS29-206ENST00000549578 FAM234AQ9H0X4 552 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms