RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 CRHP06850 196 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 FUT3P21217 361 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 KIR2DL2P43627 348 aaPredicted RBP9.48□□□□□ -0.89
CUX1-212ENST00000547394 RAB32Q13637 225 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 ZMYND11Q15326 602 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 FAM189A2Q15884 450 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 ASCL4Q6XD76 172 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 WDR86Q86TI4 376 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 THAP6Q8TBB0 222 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 MRPL24Q96A35 216 aaKnown RBP9.48□□□□□ -0.89
CUX1-212ENST00000547394 CLCF1Q9UBD9 225 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 TNFSF18Q9UNG2 199 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 A0A0B4J2A0 478 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 DBX1A6NMT0 343 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 ANKRD30BLA7E2S9 258 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 TRAPPC2LH3BP13 241 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 GRPP07492 148 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 NMBP08949 121 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 RCC1P18754 421 aaPredicted RBP9.48□□□□□ -0.89
CUX1-212ENST00000547394 AADACP22760 399 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 MPV17P39210 176 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 NRN1LQ496H8 165 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 FAM214BQ7L5A3 538 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 PXT1Q8NFP0 134 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 GMPPAQ96IJ6 420 aaPredicted RBP9.48□□□□□ -0.89
CUX1-212ENST00000547394 RNF126Q9BV68 326 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 SHPKQ9UHJ6 478 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 ZNF391Q9UJN7 358 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 PTPRQQ9UMZ3 2332 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 TRAV17A0A0B4J275 112 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 LINC00862A6NCI5 91 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 OR6C65A6NJZ3 312 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 B8ZZF3 427 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 TNFSF12O43508 249 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 OR5AC1P0C628 307 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 RPA2P15927 270 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 PSMB6P28072 239 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 MEX3BQ6ZN04 569 aaKnown RBP9.47□□□□□ -0.89
CUX1-212ENST00000547394 ZNF826PQ6ZT77 177 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 TMEM185AQ8NFB2 350 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 SLC25A40Q8TBP6 338 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 OR5P3Q8WZ94 311 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 ESRP2Q9H6T0 727 aaKnown RBP9.47□□□□□ -0.89
CUX1-212ENST00000547394 C12orf4Q9NQ89 552 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 TINAGQ9UJW2 476 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 COL12A1Q99715 3063 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 F5H0A9 414 aaPredicted RBP9.47□□□□□ -0.89
CUX1-212ENST00000547394 CDIPTO14735 213 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 NXPH3O95157 252 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 ZNF728P0DKX0 622 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 CD82P27701 267 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 TAS2R31P59538 309 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 CLLU1Q5K131 121 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 ZNF610Q8N9Z0 462 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 SPERTQ8NA61 448 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 OR1J1Q8NGS3 322 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 CPNE2Q96FN4 548 aaPredicted RBP9.47□□□□□ -0.89
CUX1-212ENST00000547394 OR2S2Q9NQN1 319 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 NECAP2Q9NVZ3 263 aa9.47□□□□□ -0.89
CUX1-212ENST00000547394 LRBAP50851 2863 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 SIRPB1O00241 398 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 SMPD2O60906 423 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 DIRAS3O95661 229 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 ZNF14P17017 642 aaPredicted RBP9.46□□□□□ -0.89
CUX1-212ENST00000547394 FABP6P51161 128 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 PPP1CBP62140 327 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 ABCA11PQ4W5N1 156 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 CCDC54Q8NEL0 328 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 SECTM1Q8WVN6 248 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 IL1F10Q8WWZ1 152 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 ST8SIA2Q92186 375 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 CDH20Q9HBT6 801 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 UFSP2Q9NUQ7 469 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 SH3BGRL2Q9UJC5 107 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 HSF4Q9ULV5 492 aa9.46□□□□□ -0.89
CUX1-212ENST00000547394 PRR33A8MZF0 331 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 IFNA2P01563 188 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 ZNF44P15621 663 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 M6PRP20645 277 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 RBM39Q14498 530 aaKnown RBP9.46□□□□□ -0.9
CUX1-212ENST00000547394 TBC1D28Q2M2D7 210 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 IAH1Q2TAA2 248 aaPredicted RBP9.46□□□□□ -0.9
CUX1-212ENST00000547394 SPIN3Q5JUX0 258 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 PXDC1Q5TGL8 231 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 FAM53AQ6NSI3 398 aaPredicted RBP9.46□□□□□ -0.9
CUX1-212ENST00000547394 FAHD2BQ6P2I3 314 aaPredicted RBP9.46□□□□□ -0.9
CUX1-212ENST00000547394 ASCL5Q7RTU5 278 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 LYZL2Q7Z4W2 148 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 RTN4IP1Q8WWV3 396 aaPredicted RBP9.46□□□□□ -0.9
CUX1-212ENST00000547394 FAHD2AQ96GK7 314 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 SMIM3Q9BZL3 60 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 ZNF286AQ9HBT8 521 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 MSL2Q9HCI7 577 aa9.46□□□□□ -0.9
CUX1-212ENST00000547394 KANTRA0A1W2PQU2 76 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 WNT9BO14905 357 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 SS18L1O75177 396 aaPredicted RBP9.45□□□□□ -0.9
CUX1-212ENST00000547394 ARHGDIBP52566 201 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 HERPUD1Q15011 391 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 GABRA6Q16445 453 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 ELP2Q6IA86 826 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms