RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 BRD3OSQ6XYD6 125 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 TCF23Q7RTU1 214 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 PDZD9Q8IXQ8 264 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 FAM185AQ8N0U4 392 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 JAGN1Q8N5M9 183 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 SHISA3A0PJX4 238 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 LIPFP07098 398 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 CCL3L1P16619 93 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 GABRR1P24046 479 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 MAPK3P27361 379 aaPredicted RBP12.94□□□□□ -0.34
RPAIN-206ENST00000539417 PSMB9P28065 219 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 MTNR1BP49286 362 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 KLRD1Q13241 179 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 EDDM3AQ14507 147 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 RSU1Q15404 277 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 C11orf91Q3C1V1 193 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 KCTD21Q4G0X4 260 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 HSD17B12Q53GQ0 312 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 SPIN3Q5JUX0 258 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 VMO1Q7Z5L0 202 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 OR8H2Q8N162 312 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 SVOPQ8N4V2 548 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 C11orf42Q8N5U0 333 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 Q8NFD4 153 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 LHX4Q969G2 390 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 SNX22Q96L94 193 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 SLC6A7Q99884 636 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 FAM234AQ9H0X4 552 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 SEBOXQ9HB31 216 aaPredicted RBP12.94□□□□□ -0.34
RPAIN-206ENST00000539417 EXOSC4Q9NPD3 245 aaKnown RBP12.94□□□□□ -0.34
RPAIN-206ENST00000539417 SIRT7Q9NRC8 400 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 NUP50Q9UKX7 468 aa12.94□□□□□ -0.34
RPAIN-206ENST00000539417 A0A0G2JK05 382 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 CENPVL3A0A0U1RRI6 287 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 A0A1W2PQ09 198 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 SLC33A1O00400 549 aaPredicted RBP12.93□□□□□ -0.34
RPAIN-206ENST00000539417 SRMP19623 302 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 SERPINA2P20848 420 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 GABRA5P31644 462 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 RPL31P62899 125 aaKnown RBP12.93□□□□□ -0.34
RPAIN-206ENST00000539417 GRK1Q15835 563 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 METTL11BQ5VVY1 283 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 GLIPR1L1Q6UWM5 242 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 OR51T1Q8NGJ9 327 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 ZNF48Q96MX3 618 aaPredicted RBP12.93□□□□□ -0.34
RPAIN-206ENST00000539417 METTL9Q9H1A3 318 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 PPA2Q9H2U2 334 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 KCNK15Q9H427 330 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 TCF7L1Q9HCS4 588 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 NDUFB11Q9NX14 153 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 IL36GQ9NZH8 169 aa12.93□□□□□ -0.34
RPAIN-206ENST00000539417 MRPS28Q9Y2Q9 187 aaKnown RBP12.93□□□□□ -0.34
RPAIN-206ENST00000539417 TRAV24A0A0B4J272 114 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 MDFIC2A0A1B0GVS7 189 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 SH2D1BO14796 132 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 ZNF44P15621 663 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 LMO1P25800 156 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 EDDM3BP56851 147 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 TUSC1Q2TAM9 212 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 SLC22A6Q4U2R8 563 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 FIP1L1Q6UN15 594 aaKnown RBP12.92□□□□□ -0.34
RPAIN-206ENST00000539417 PNKDQ8N490 385 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 TMEM104Q8NE00 496 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 TNFRSF14Q92956 283 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 CPNE2Q96FN4 548 aaPredicted RBP12.92□□□□□ -0.34
RPAIN-206ENST00000539417 OCEL1Q9H607 264 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 RHOFQ9HBH0 211 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 KPTNQ9Y664 436 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 DSCAML1Q8TD84 2053 aa12.92□□□□□ -0.34
RPAIN-206ENST00000539417 TRBV23-1A0A0A0MS06 115 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 A0A1W2PRD5 423 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 A0A1W2PRF3 423 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 A0A1W2PRM7 423 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 RNASEK-C17orf49H0YIS7 233 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 HSPB6O14558 160 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 GEMIN2O14893 280 aaKnown RBP12.91□□□□□ -0.34
RPAIN-206ENST00000539417 DEGS1O15121 323 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 CD37P11049 281 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 CALRP27797 417 aaKnown RBP12.91□□□□□ -0.34
RPAIN-206ENST00000539417 DLX6P56179 175 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 TRAM1Q15629 374 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 NEDD8Q15843 81 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 HCP5Q6MZN7 132 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 CD200R1LQ6Q8B3 271 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 OSR2Q8N2R0 312 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 KIR3DL3Q8N743 410 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 PHYHIPQ92561 330 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 THRSPQ92748 146 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 COQ2Q96H96 371 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 BANF2Q9H503 90 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 ING3Q9NXR8 418 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 ST3GAL6Q9Y274 331 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 AK6Q9Y3D8 172 aaKnown RBP12.91□□□□□ -0.34
RPAIN-206ENST00000539417 VENTXO95231 258 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 GLIPR1P48060 266 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 RBM11P57052 281 aaKnown RBP12.91□□□□□ -0.34
RPAIN-206ENST00000539417 AESQ08117 197 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 ATXN7L3Q14CW9 347 aaPredicted RBP12.91□□□□□ -0.34
RPAIN-206ENST00000539417 AWAT2Q6E213 333 aa12.91□□□□□ -0.34
RPAIN-206ENST00000539417 OR10K2Q6IF99 312 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms