RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SKA2Q8WVK7 121 aaPredicted RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 HGDQ93099 445 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 SMIM10Q96HG1 83 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 FOPNLQ96NB1 174 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 MCEEQ96PE7 176 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 MBOAT4Q96T53 435 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 SELENOIQ9C0D9 397 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 RNF167Q9H6Y7 350 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 PTGES2Q9H7Z7 377 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 UBAP1Q9NZ09 502 aa2.59□□□□□ -1.99
CD44-235ENST00000532339 PSMC3IPQ9P2W1 217 aaPredicted RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 RABL2AQ9UBK7 228 aaPredicted RBP2.59□□□□□ -1.99
CD44-235ENST00000532339 KIAA2026Q5HYC2 2103 aa2.59□□□□□ -2
CD44-235ENST00000532339 IGHV1-18A0A0C4DH31 117 aa2.58□□□□□ -2
CD44-235ENST00000532339 A6NIZ1 184 aa2.58□□□□□ -2
CD44-235ENST00000532339 TNFSF11O14788 317 aa2.58□□□□□ -2
CD44-235ENST00000532339 MFSD11O43934 449 aa2.58□□□□□ -2
CD44-235ENST00000532339 AGTP01019 485 aa2.58□□□□□ -2
CD44-235ENST00000532339 SERPIND1P05546 499 aa2.58□□□□□ -2
CD44-235ENST00000532339 ZNF43P17038 809 aa2.58□□□□□ -2
CD44-235ENST00000532339 MIPP30301 263 aa2.58□□□□□ -2
CD44-235ENST00000532339 KRTAP10-1P60331 282 aa2.58□□□□□ -2
CD44-235ENST00000532339 PRPS1P60891 318 aa2.58□□□□□ -2
CD44-235ENST00000532339 RAP1BP61224 184 aa2.58□□□□□ -2
CD44-235ENST00000532339 PAFAH1B3Q15102 231 aaKnown RBP2.58□□□□□ -2
CD44-235ENST00000532339 C1orf100Q5SVJ3 147 aa2.58□□□□□ -2
CD44-235ENST00000532339 LCE1CQ5T751 118 aa2.58□□□□□ -2
CD44-235ENST00000532339 LCE1BQ5T7P3 118 aa2.58□□□□□ -2
CD44-235ENST00000532339 C1orf146Q5VVC0 180 aa2.58□□□□□ -2
CD44-235ENST00000532339 FBXW9Q5XUX1 488 aa2.58□□□□□ -2
CD44-235ENST00000532339 DNAJC24Q6P3W2 148 aa2.58□□□□□ -2
CD44-235ENST00000532339 C19orf35Q6ZS72 473 aa2.58□□□□□ -2
CD44-235ENST00000532339 ERI1Q8IV48 349 aaKnown RBP2.58□□□□□ -2
CD44-235ENST00000532339 NKAPP1Q8N9T2 125 aa2.58□□□□□ -2
CD44-235ENST00000532339 CCDC71LQ8N9Z2 235 aa2.58□□□□□ -2
CD44-235ENST00000532339 SPATA4Q8NEY3 305 aa2.58□□□□□ -2
CD44-235ENST00000532339 BBS1Q8NFJ9 593 aa2.58□□□□□ -2
CD44-235ENST00000532339 OR4K17Q8NGC6 315 aa2.58□□□□□ -2
CD44-235ENST00000532339 OR5M1Q8NGP8 315 aa2.58□□□□□ -2
CD44-235ENST00000532339 OR13C4Q8NGS5 318 aa2.58□□□□□ -2
CD44-235ENST00000532339 OR2V1Q8NHB1 315 aa2.58□□□□□ -2
CD44-235ENST00000532339 HIST1H4GQ99525 98 aa2.58□□□□□ -2
CD44-235ENST00000532339 TSG101Q99816 390 aa2.58□□□□□ -2
CD44-235ENST00000532339 ARHGDIGQ99819 225 aa2.58□□□□□ -2
CD44-235ENST00000532339 NICN1Q9BSH3 213 aa2.58□□□□□ -2
CD44-235ENST00000532339 GIN1Q9NXP7 522 aa2.58□□□□□ -2
CD44-235ENST00000532339 CD274Q9NZQ7 290 aa2.58□□□□□ -2
CD44-235ENST00000532339 STARD10Q9Y365 291 aa2.58□□□□□ -2
CD44-235ENST00000532339 IGHV1-69-2A0A0G2JMI3 117 aa2.57□□□□□ -2
CD44-235ENST00000532339 ISPDA4D126 451 aa2.57□□□□□ -2
CD44-235ENST00000532339 CCDC182A6NF36 153 aa2.57□□□□□ -2
CD44-235ENST00000532339 PSTPIP1O43586 416 aa2.57□□□□□ -2
CD44-235ENST00000532339 UGT2B11O75310 529 aa2.57□□□□□ -2
CD44-235ENST00000532339 WBP4O75554 376 aaKnown RBP2.57□□□□□ -2
CD44-235ENST00000532339 SNAPINO95295 136 aa2.57□□□□□ -2
CD44-235ENST00000532339 IGF2P01344 180 aa2.57□□□□□ -2
CD44-235ENST00000532339 KRT14P02533 472 aa2.57□□□□□ -2
CD44-235ENST00000532339 OPN1SWP03999 348 aa2.57□□□□□ -2
CD44-235ENST00000532339 CALB1P05937 261 aa2.57□□□□□ -2
CD44-235ENST00000532339 PNMA6AP0CW24 399 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 TROVE2P10155 538 aaKnown RBP eCLIP2.57□□□□□ -2
CD44-235ENST00000532339 GALP22466 123 aa2.57□□□□□ -2
CD44-235ENST00000532339 FDFT1P37268 417 aa2.57□□□□□ -2
CD44-235ENST00000532339 ATP5OP48047 213 aa2.57□□□□□ -2
CD44-235ENST00000532339 GPM6AP51674 278 aa2.57□□□□□ -2
CD44-235ENST00000532339 ZNF140P52738 457 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 GNB2P62879 340 aa2.57□□□□□ -2
CD44-235ENST00000532339 BTN3A2P78410 334 aa2.57□□□□□ -2
CD44-235ENST00000532339 BIKQ13323 160 aa2.57□□□□□ -2
CD44-235ENST00000532339 RCN1Q15293 331 aa2.57□□□□□ -2
CD44-235ENST00000532339 PPP1R7Q15435 360 aa2.57□□□□□ -2
CD44-235ENST00000532339 TRIP13Q15645 432 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 C2orf83Q53S99 150 aa2.57□□□□□ -2
CD44-235ENST00000532339 CARD17Q5XLA6 110 aa2.57□□□□□ -2
CD44-235ENST00000532339 NCBP2-AS2Q69YL0 99 aa2.57□□□□□ -2
CD44-235ENST00000532339 HBMQ6B0K9 141 aa2.57□□□□□ -2
CD44-235ENST00000532339 C1orf94Q6P1W5 598 aa2.57□□□□□ -2
CD44-235ENST00000532339 DCUN1D2Q6PH85 259 aa2.57□□□□□ -2
CD44-235ENST00000532339 CEMP1Q6PRD7 247 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 LRRC74BQ6ZQY2 392 aa2.57□□□□□ -2
CD44-235ENST00000532339 Q6ZSR3 168 aa2.57□□□□□ -2
CD44-235ENST00000532339 TMEM179BQ7Z7N9 219 aa2.57□□□□□ -2
CD44-235ENST00000532339 ZNF546Q86UE3 836 aa2.57□□□□□ -2
CD44-235ENST00000532339 CALHM3Q86XJ0 350 aa2.57□□□□□ -2
CD44-235ENST00000532339 ZNF100Q8IYN0 542 aa2.57□□□□□ -2
CD44-235ENST00000532339 GTPBP8Q8N3Z3 284 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 SPICQ8N5J4 248 aa2.57□□□□□ -2
CD44-235ENST00000532339 TBC1D19Q8N5T2 526 aa2.57□□□□□ -2
CD44-235ENST00000532339 C14orf178Q8N769 122 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 OR51S1Q8NGJ8 323 aa2.57□□□□□ -2
CD44-235ENST00000532339 PYROXD1Q8WU10 500 aa2.57□□□□□ -2
CD44-235ENST00000532339 ANKRD7Q92527 254 aa2.57□□□□□ -2
CD44-235ENST00000532339 CPNE4Q96A23 557 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 MS4A4EQ96PG1 132 aa2.57□□□□□ -2
CD44-235ENST00000532339 EBF4Q9BQW3 602 aa2.57□□□□□ -2
CD44-235ENST00000532339 FAM192AQ9GZU8 254 aa2.57□□□□□ -2
CD44-235ENST00000532339 PCBD2Q9H0N5 130 aa2.57□□□□□ -2
CD44-235ENST00000532339 ANKRA2Q9H9E1 313 aa2.57□□□□□ -2
CD44-235ENST00000532339 PATZ1Q9HBE1 687 aaKnown RBP2.57□□□□□ -2
CD44-235ENST00000532339 BTNL2Q9UIR0 455 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms