RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SERTM1A2A2V5 107 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 NPIPB6E9PJ23 425 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 CD1AP06126 327 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 KLRB1Q12918 225 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 ERV3-1Q14264 604 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 ZNF124Q15973 351 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 LRRC10Q5BKY1 277 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 SH2D5Q6ZV89 423 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 TCF23Q7RTU1 214 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 SPNS2Q8IVW8 549 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 OR2Y1Q8NGV0 311 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 OR13G1Q8NGZ3 307 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 EMC6Q9BV81 110 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 C1QTNF9BB2RNN3 333 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 ZFPL1O95159 310 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 FGF8P55075 233 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 CLDN2P57739 230 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 DEFB133Q30KQ1 61 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 WDR38Q5JTN6 314 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 SARAFQ96BY9 339 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 SPACA5Q96QH8 159 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 MYOZ1Q9NP98 299 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 IL36GQ9NZH8 169 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 CES1P1Q9UKY3 287 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 CXorf51AA0A1B0GTR3 108 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 MBLAC1A4D2B0 266 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 C5orf49A4QMS7 147 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 DNAL4O96015 105 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 FAHP16930 419 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 MRGPREQ86SM8 312 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 OR5A1Q8NGJ0 315 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 STARD10Q9Y365 291 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 LMO7Q8WWI1 1683 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 CEACAM6P40199 344 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 GNG10P50151 68 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 LCN2P80188 198 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 ISXQ2M1V0 245 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 LRP10Q7Z4F1 713 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 JKAMPQ9P055 326 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 MTCH2Q9Y6C9 303 aa9.99□□□□□ -0.81
LIMCH1-208ENST00000508501 CYR61O00622 381 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 CEACAM3P40198 252 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 NOVP48745 357 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MVDP53602 400 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 INSM1Q01101 510 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 RELQ04864 619 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TMEM215Q68D42 235 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 SSX8Q7RTT4 187 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 KMT5CQ86Y97 462 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MUC15Q8N387 334 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 ZNF775Q96BV0 537 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 NCOR1P1Q9H4R4 102 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 NDUFB3O43676 98 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 CHST1O43916 411 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 CXCL3P19876 107 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 DPTQ07507 201 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MYBPHQ13203 477 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TMEM211Q6ICI0 200 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TMEM45BQ96B21 275 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 KCNE5Q9UJ90 142 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 CACNA1FO60840 1977 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MYH11P35749 1972 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 FCGR3BO75015 233 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 EDN3P14138 238 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MUC1P15941 1255 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 PMELP40967 661 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 CCL14Q16627 93 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 RGS7BPQ6MZT1 257 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 SHISA6Q6ZSJ9 500 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 LRRC75AQ8NAA5 344 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TOX2Q96NM4 488 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 SIGMAR1Q99720 223 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MS4A7Q9GZW8 240 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 PARLQ9H300 379 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 DNAJC4Q9NNZ3 241 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 LINC01553A4QN01 128 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 PLA2G10O15496 165 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 ATP6V0CP27449 155 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 RAB9AP51151 201 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 SLC35B1P78383 322 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 DMRTA1Q5VZB9 504 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 GBGT1Q8N5D6 347 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TTC9CQ8N5M4 171 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TEX29Q8N6K0 151 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 OR8G5Q8NG78 346 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 OR4P4Q8NGL7 312 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 HMGCLL1Q8TB92 370 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 RND1Q92730 232 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 ALKBH7Q9BT30 221 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 PSMG3Q9BT73 122 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TXNRD2Q9NNW7 524 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 MPC1Q9Y5U8 109 aa9.98□□□□□ -0.81
LIMCH1-208ENST00000508501 TRAV9-1A0A075B6T8 112 aa9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 NPIPB8E9PQR5 432 aa9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 NPIPB7O75200 414 aa9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 KBTBD11O94819 623 aa9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 AMY1AP04745 511 aa9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 MEF2BQ02080 365 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 FAM53BQ14153 422 aa9.97□□□□□ -0.81
LIMCH1-208ENST00000508501 GAB4Q2WGN9 574 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms