RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 GYPAP02724 150 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 BMXP51813 675 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 AWAT1Q58HT5 328 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 GCSAMQ8N6F7 178 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 OR5A2Q8NGI9 324 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 CMTM3Q96MX0 182 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 HIST1H2AAQ96QV6 131 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 GPER1Q99527 375 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 PCGF1Q9BSM1 259 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 CNTD2Q9H8S5 307 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 COMMD3Q9UBI1 195 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 CTSZQ9UBR2 303 aa14.93□□□□□ -0.02
SQSTM1-209ENST00000504627 PQLC2LA1A4F0 135 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 RGS5O15539 181 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 BPNT1O95861 308 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 PLATP00750 562 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 LIPFP07098 398 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 UBBP0CG47 229 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 HKR1P10072 659 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 SNRPBP14678 240 aaKnown RBP14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 ATP1B3P54709 279 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 GNG3P63215 75 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 TUSC1Q2TAM9 212 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 GPR157Q5UAW9 335 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 AWAT2Q6E213 333 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 C9orf139Q6ZV77 190 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 OR4D6Q8NGJ1 314 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 OR5P3Q8WZ94 311 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 FAM3DQ96BQ1 224 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 SPACA5Q96QH8 159 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 MICU1Q9BPX6 476 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 RTL8AQ9BWD3 113 aa14.92□□□□□ -0.02
SQSTM1-209ENST00000504627 A0A0B4J203 849 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 FAM230AA0A1W2PPH8 454 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 CTDSP2O14595 271 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 PAHP00439 452 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 POU3F4P49335 361 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 MTCP1P56278 107 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 CLDN12P56749 244 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 ZP1P60852 638 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 P2RY14Q15391 338 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 MICBQ29980 383 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 UBE2NLQ5JXB2 153 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 CRIP3Q6Q6R5 217 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 BRD3OSQ6XYD6 125 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 FAM90A1Q86YD7 464 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 LAX1Q8IWV1 398 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 LRRC29Q8WV35 223 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 S100ZQ8WXG8 99 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 ZDHHC16Q969W1 377 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 CEP19Q96LK0 163 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 C1orf147Q96MC9 270 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 FGF23Q9GZV9 251 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 PPP1R3EQ9H7J1 279 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 GHRLQ9UBU3 117 aa14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 MRPS28Q9Y2Q9 187 aaKnown RBP14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 SOX21Q9Y651 276 aaPredicted RBP14.91□□□□□ -0.02
SQSTM1-209ENST00000504627 IGHV3OR15-7A0A075B7D8 119 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 TMEM210A6NLX4 147 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 TMPRSS2O15393 492 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 TOX4O94842 621 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 LHBP01229 141 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 APOA1P02647 267 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 RNASE1P07998 156 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 ARSBP15848 533 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 ETV6P41212 452 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 OR3A4PP47883 348 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 SLC9A3R2Q15599 337 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 METTL11BQ5VVY1 283 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 TEX36Q5VZQ5 186 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 OR2W3Q7Z3T1 314 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 SAMD12Q8N8I0 201 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 ZSCAN4Q8NAM6 433 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 OR5H6Q8NGV6 325 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 SGMS2Q8NHU3 365 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 TNFAIP8L1Q8WVP5 186 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 NKX3-1Q99801 234 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 MIXL1Q9H2W2 232 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 AKIP1Q9NQ31 210 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 FBLN5Q9UBX5 448 aa14.9□□□□□ -0.02
SQSTM1-209ENST00000504627 IGKV1-27A0A075B6S5 117 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 MDFIC2A0A1B0GVS7 189 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 DVL1O14640 695 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 CDIPTO14735 213 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 TNFRSF13BO14836 293 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 LDLRAD4O15165 306 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 HPGDSO60760 199 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 EGR1P18146 543 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 CFHR2P36980 270 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 PTGFRP43088 359 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 GPM6AP51674 278 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 BPIFB3P59826 476 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 DMRTC1Q5HYR2 192 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 WDR86Q86TI4 376 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 CCDC190Q86UF4 302 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 ZNF573Q86YE8 665 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 C11orf53Q8IXP5 236 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 PXT1Q8NFP0 134 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 OR51D1Q8NGF3 324 aa14.89□□□□□ -0.03
SQSTM1-209ENST00000504627 ST8SIA4Q92187 359 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms