RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 LCATP04180 440 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF32P17041 273 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SPINK2P20155 84 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 EIF2S3P41091 472 aaKnown RBP13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CNN3Q15417 329 aaKnown RBP13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SP6Q3SY56 376 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 AVPI1Q5T686 147 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 BRICD5Q6PL45 260 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 YRDCQ86U90 279 aaKnown RBP13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GGNQ86UU5 652 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SPAG16Q8N0X2 631 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR2Y1Q8NGV0 311 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FGFBP3Q8TAT2 258 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CPNE2Q96FN4 548 aaPredicted RBP13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 BSCL2Q96G97 398 aaPredicted RBP13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SPOCK3Q9BQ16 436 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PARP11Q9NR21 331 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PTPRBP23467 1997 aa13.93□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FAM157AC9JC47 383 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GEMIN2O14893 280 aaKnown RBP13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DNPH1O43598 174 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF728P0DKX0 622 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SPP1P10451 314 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NFYBP25208 207 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 KCNJ3P48549 501 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RBP2P50120 134 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PIGYQ3MUY2 71 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR10AD1Q8NGE0 317 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TOMM40LQ969M1 308 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ERGIC1Q969X5 290 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SMIM3Q9BZL3 60 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NAA60Q9H7X0 242 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NSG1A0A0A6YYJ2 146 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GJE1A6NN92 205 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF850A8MQ14 1090 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 JTBO76095 146 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 MBPP02686 304 aaPredicted RBP13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR5AC1P0C628 307 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 B4GALT1P15291 398 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PSG4Q00888 419 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 Q6ZPA2 131 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 LHFPL2Q6ZUX7 228 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 LYPD6BQ8NI32 183 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CPT1CQ8TCG5 803 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SLC39A7Q92504 469 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 BORCS8Q96FH0 119 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GALNT14Q96FL9 552 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 IGF2RP11717 2491 aa13.92□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TRBV23-1A0A0A0MS06 115 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 C9J4A7 227 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FARS2O95363 451 aaKnown RBP13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 NRASP01111 189 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SFTA3P0C7M3 94 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SRD5A2P31213 254 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 GPX4P36969 197 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZFP36L1Q07352 338 aaKnown RBP13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SMCO1Q147U7 214 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CLEC9AQ6UXN8 241 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ALKBH3Q96Q83 286 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 WNT5BQ9H1J7 359 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ARV1Q9H2C2 271 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DMRT1Q9Y5R6 373 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FAM221AA4D161 298 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TM4SF5O14894 197 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SCGB1D2O95969 90 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 HEXAP06865 529 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CARD18P57730 90 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FAM3AP98173 230 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 TSPO2Q5TGU0 170 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 Q6ZRG5 221 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 LYZL2Q7Z4W2 148 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SKA3Q8IX90 412 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 FBXL14Q8N1E6 418 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 LRTM2Q8N967 370 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RTN4IP1Q8WWV3 396 aaPredicted RBP13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 C18orf12Q96KH6 178 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PLEKHA2Q9HB19 425 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZFP57Q9NU63 452 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 KCNIP3Q9Y2W7 256 aa13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 PRRC2CQ9Y520 2896 aaKnown RBP13.91□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DSPP15924 2871 aaKnown RBP13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 hCG_38984A0A1B0GV85 526 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 H7C1Q1 480 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 UBE2CO00762 179 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 AGPAT2O15120 278 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RFPL3SP0C7P2 107 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 RNF224P0DH78 156 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 HTR5AP47898 357 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 DAZAP2Q15038 168 aaPredicted RBP13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SLC22A25Q6T423 547 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 AAED1Q7RTV5 226 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ZNF100Q8IYN0 542 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OSR2Q8N2R0 312 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 UBAC2Q8NBM4 344 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 ADGRG7Q96K78 797 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 OR2H1Q9GZK4 316 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 BCO1Q9HAY6 547 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 WFDC1Q9HC57 220 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 SHANK1Q9Y566 2161 aa13.9□□□□□ -0.18
MSH5-SAPCD1-208ENST00000498473 CXCL13O43927 109 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms