RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 IQCJQ1A5X6 159 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 OR5C1Q8NGR4 320 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 FAM234AQ9H0X4 552 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 PLEKHF2Q9H8W4 249 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 MRPS18BQ9Y676 258 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF646O15015 1829 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 OR5H1A6NKK0 313 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 MMP7P09237 267 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 OR3A4PP47883 348 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 HLA-DRB3P79483 266 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 PMS2P11Q13670 270 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 MSMO1Q15800 293 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 DEFB124Q8NES8 71 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 OIT3Q8WWZ8 545 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 VPS25Q9BRG1 176 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 ELOA3CA0A087WX78 387 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 H3BQ15 152 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 C1QL1O75973 258 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 CD1AP06126 327 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 LINC00271P0C7V0 271 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 HOXB1P14653 301 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 DLK1P80370 383 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 ENDOGQ14249 297 aaKnown RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 UBE2V2Q15819 145 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 DHRS11Q6UWP2 260 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 DYNLRB1Q9NP97 96 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF107Q9UII5 783 aaPredicted RBP14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 A0A1W2PR80 420 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 METTL15P1P0C7V9 234 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 FABP6P51161 128 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 UNQ9370/PRO34162Q6UXP9 181 aa14.36□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF816-ZNF321PA0A0X1KG74 233 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 THY1P04216 161 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 CCL2P13500 99 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 DHODHQ02127 395 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 HES3Q5TGS1 186 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 C6orf201Q7Z4U5 140 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 OR5AC1P0C628 307 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 SPINK2P20155 84 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 ACKR3P25106 362 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 SRD5A2P31213 254 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 SULT1A2P50226 295 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 TSPO2Q5TGU0 170 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 BRICD5Q6PL45 260 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 LHFPL2Q6ZUX7 228 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 OR2C3Q8N628 320 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 OR6X1Q8NH79 312 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 SLC25A28Q96A46 364 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF320A2RRD8 509 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 NDUFS6O75380 124 aaKnown RBP14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 ASAH2BP0C7U1 165 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 IAPPP10997 89 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 KIR3DL2P43630 455 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 MZT1Q08AG7 82 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 GGTLC2Q14390 218 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 TP53TG5Q9Y2B4 290 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 ROS1P08922 2347 aa14.35□□□□□ -0.11
CCDC88B-209ENST00000494080 GEMIN2O14893 280 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 ARR3P36575 388 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 CEBPEQ15744 281 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF439Q8NDP4 499 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 MRPL24Q96A35 216 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 GPR87Q9BY21 358 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 REG4Q9BYZ8 158 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 TRGV5A0A0B4J1U4 118 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 HSBP1L1C9JCN9 74 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 SIRPB1O00241 398 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 TOMM20LQ6UXN7 152 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 OR8B12Q8NGG6 310 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 SARAFQ96BY9 339 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 V9GYS6 101 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 TMEM265A0A087WTH1 108 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 KIR2DS1A0A191URI9 304 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 WDR1O75083 606 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 ACAA1P09110 424 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 VSIG8P0DPA2 414 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 THBS4P35443 961 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 KIR2DS4P43632 304 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 RAB31Q13636 194 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 KIR2DS1Q14954 304 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 OR8G1Q15617 311 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 DRAM2Q6UX65 266 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 THSD7BQ9C0I4 1608 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 ZNF732B4DXR9 585 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 TSPAN2O60636 221 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 CDC14BO60729 498 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 GGACTQ9BVM4 153 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 DMRT1Q9Y5R6 373 aa14.34□□□□□ -0.11
CCDC88B-209ENST00000494080 ABCA1O95477 2261 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 M0R143 59 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 PTBP3O95758 552 aaKnown RBP14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 MT-CO2P00403 227 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 RAC3P60763 192 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 OSR2Q8N2R0 312 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 AMELYQ99218 206 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 GPR61Q9BZJ8 451 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 KCNK7Q9Y2U2 307 aa14.33□□□□□ -0.11
CCDC88B-209ENST00000494080 MASP2O00187 686 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 DHRS3O75911 302 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF205O95201 554 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms