RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZDHHC8Q9ULC8 765 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MRPS28Q9Y2Q9 187 aaKnown RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 WSB1Q9Y6I7 421 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ABCA1O95477 2261 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 XKRY2A2RUG3 117 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF727A8MUV8 499 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC17A2O00624 439 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 XRCC2O43543 280 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SPRY1O43609 319 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ABHD16AO95870 558 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GABRA4P48169 554 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PLCXD3Q63HM9 321 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MAML2Q8IZL2 1156 aaPredicted RBP9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TMEM217Q8N7C4 229 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR13C8Q8NGS7 320 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR10D3Q8NH80 312 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IL1F10Q8WWZ1 152 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SPTSSAQ969W0 71 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PARD6AQ9NPB6 346 aa9.46□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPQ1 181 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CLDN34H7C241 214 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DIRAS3O95661 229 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SP9P0CG40 484 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ID4P47928 161 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ISXQ2M1V0 245 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CDCP2Q5VXM1 449 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF774Q6NX45 483 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR52N4Q8NGI2 321 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FAM131CQ96AQ9 280 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR14J1Q9UGF5 321 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CLDN16Q9Y5I7 305 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PCNX3Q9H6A9 2034 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 A0A1W2PP11 408 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPE3 182 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LIPT2A6NK58 231 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 M0R135 149 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KLF4O43474 513 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RCC1P18754 421 aaPredicted RBP9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LPAR6P43657 344 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TOMM20LQ6UXN7 152 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZDHHC22Q8N966 263 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF799Q96GE5 643 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 UCK1Q9HA47 277 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PLEKHA2Q9HB19 425 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FREM1Q5H8C1 2179 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 A0A0J9YW62 118 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CEBPZOSA8MTT3 80 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NKX2-8O15522 239 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IGHV2-70P01814 119 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CD46P15529 392 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HOXA5P20719 270 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ACKR3P25106 362 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HNF4GQ14541 408 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 VAMP3Q15836 100 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KCNIP4Q6PIL6 250 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MRPL21Q7Z2W9 205 aaKnown RBP9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CMTM1Q8IZ96 169 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GVQW1Q8N7I0 195 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EXTL1Q92935 676 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 C14orf144Q96I85 54 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TAAR9Q96RI9 348 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PRR13Q9NZ81 148 aa9.45□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IGKV3D-11A0A0A0MRZ8 115 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 C5orf49A4QMS7 147 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GJE1A6NN92 205 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DHHO43323 396 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CBR3O75828 277 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CELA3AP09093 270 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LTC4SQ16873 150 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SPNS3Q6ZMD2 512 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SUMF1Q8NBK3 374 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR4C5Q8NGB2 326 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MISP3Q96FF7 219 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TMEM59Q9BXS4 323 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PARP11Q9NR21 331 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF814B7Z6K7 855 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 M0QZK8 103 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GPR137BO60478 399 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GGCTO75223 188 aaKnown RBP9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MDKP21741 143 aaPredicted RBP9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MSX1P28360 303 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LIMK1P53667 647 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 UBE2NP61088 152 aaKnown RBP9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IKZF1Q13422 519 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EXD3Q8N9H8 876 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OXGR1Q96P68 337 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PRRX2Q99811 253 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NICN1Q9BSH3 213 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC25A31Q9H0C2 315 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CBLN4Q9NTU7 201 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FLVCR1Q9Y5Y0 555 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 A0A0G2JK05 382 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PIN1P1O15428 100 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MSR1P21757 451 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TMEM33P57088 247 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TAS2R46P59540 309 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PYY3Q5JQD4 70 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DMRTA1Q5VZB9 504 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR2M3Q8NG83 312 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms