RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF281Q9Y2X9 895 aa14.77□□□□□ -0.05
COL9A3-214ENST00000490398 TRBV5-5A0A0J9YX44 114 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 MAGEA13PA6NCF6 341 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 C17orf98A8MV24 154 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 RAB3AP20336 220 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 MDKP21741 143 aaPredicted RBP14.76□□□□□ -0.05
COL9A3-214ENST00000490398 GDPD3Q7L5L3 318 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 SATL1Q86VE3 508 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 SAXO1Q8IYX7 474 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 TMEM86BQ8N661 226 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 C3orf56Q8N813 242 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 OR10K1Q8NGX5 313 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 SSMEM1Q8WWF3 244 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 CHCHD3Q9NX63 227 aaKnown RBP14.76□□□□□ -0.05
COL9A3-214ENST00000490398 ZNF581Q9P0T4 197 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 FAM96BQ9Y3D0 163 aa14.76□□□□□ -0.05
COL9A3-214ENST00000490398 A0A1W2PPK0 400 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 GPR137BO60478 399 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 FBP1P09467 338 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 OR3A4PP47883 348 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 SCN1BQ07699 218 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 SPIN3Q5JUX0 258 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 C6orf141Q5SZD1 244 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 LDLRAD2Q5SZI1 272 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 STX19Q8N4C7 294 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 NANOGP1Q8N7R0 232 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 ZSCAN4Q8NAM6 433 aaPredicted RBP14.75□□□□□ -0.05
COL9A3-214ENST00000490398 TNFAIP8L1Q8WVP5 186 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 VCXQ9H320 206 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 EXOSC4Q9NPD3 245 aaKnown RBP14.75□□□□□ -0.05
COL9A3-214ENST00000490398 C1RLQ9NZP8 487 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 SF3B6Q9Y3B4 125 aaKnown RBP14.75□□□□□ -0.05
COL9A3-214ENST00000490398 POMT1Q9Y6A1 747 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 NBEAL1Q6ZS30 2694 aa14.75□□□□□ -0.05
COL9A3-214ENST00000490398 TRAV8-7A0A075B6U6 113 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 A0A0G2JK05 382 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 MMP23AO75900 390 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 ZNF728P0DKX0 622 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 IGFBP3P17936 291 aaPredicted RBP14.74□□□□□ -0.05
COL9A3-214ENST00000490398 ACSM1Q08AH1 577 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 FOXL1Q12952 345 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 BAIAP2L2Q6UXY1 529 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 LHFPL4Q7Z7J7 247 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 DYNAPQ8N1N2 210 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 TBC1D15Q8TC07 691 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 NR1H4Q96RI1 486 aaPredicted RBP14.74□□□□□ -0.05
COL9A3-214ENST00000490398 PPA2Q9H2U2 334 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 PCDHGB5Q9Y5G0 923 aa14.74□□□□□ -0.05
COL9A3-214ENST00000490398 A0A1W2PPH5 198 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 PTGES3LE9PB15 166 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 SH2D1BO14796 132 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 PIN1P1O15428 100 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 CDRT1O95170 752 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 CDK1P06493 297 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 CD2P06729 351 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 LMO1P25800 156 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 GLIPR1P48060 266 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 P2RX3P56373 397 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 AESQ08117 197 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 MED21Q13503 144 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 COQ2Q96H96 371 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 OR14A2Q96R54 314 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 GPER1Q99527 375 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 ING3Q9NXR8 418 aa14.73□□□□□ -0.05
COL9A3-214ENST00000490398 TRBV5-7A0A0A0MS05 114 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 H0YJX3 145 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 SLC33A1O00400 549 aaPredicted RBP14.72□□□□□ -0.05
COL9A3-214ENST00000490398 MGST3O14880 152 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 ALDOBP05062 364 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 IGHV1-8P0DP01 117 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 ZNF44P15621 663 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 WNT4P56705 351 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 MEF2CQ06413 473 aaPredicted RBP14.72□□□□□ -0.05
COL9A3-214ENST00000490398 SRSF4Q08170 494 aaKnown RBP14.72□□□□□ -0.05
COL9A3-214ENST00000490398 INSL4Q14641 139 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 PIGYQ3MUY2 71 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 Q499Y3 187 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 MIDNQ504T8 468 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 YIF1BQ5BJH7 314 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 DDI2Q5TDH0 399 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 ASCL4Q6XD76 172 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 PXT1Q8NFP0 134 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 ZNF714Q96N38 554 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 OR5M11Q96RB7 305 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 ZNF747Q9BV97 191 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 FAM192AQ9GZU8 254 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 PPIL3Q9H2H8 161 aaKnown RBP14.72□□□□□ -0.05
COL9A3-214ENST00000490398 HEXA-AS1Q9H8Q6 139 aa14.72□□□□□ -0.05
COL9A3-214ENST00000490398 LSM2Q9Y333 95 aaKnown RBP14.72□□□□□ -0.05
COL9A3-214ENST00000490398 A0A1W2PP11 408 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 hADV38S2A0JD32 116 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 MYL12BO14950 172 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 DEGS1O15121 323 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 PAHP00439 452 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 CELP19835 753 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 BDKRB2P30411 391 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 GDNFP39905 211 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 PTGFRP43088 359 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 MTNR1BP49286 362 aa14.71□□□□□ -0.05
COL9A3-214ENST00000490398 RAG2P55895 527 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms