RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MED19A0JLT2 244 aaPredicted RBP15.48■□□□□ 0.07
VIM-206ENST00000487938 PCP4L1A6NKN8 68 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 CYTIPO60759 359 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 CER1O95813 267 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 DUSP1P28562 367 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 GLP1RP43220 463 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 DVL1P1P54792 670 aaPredicted RBP15.48■□□□□ 0.07
VIM-206ENST00000487938 HERV-K104P61576 105 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 LPAL2Q16609 132 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 DCAF12Q5T6F0 453 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 RIPPLY2Q5TAB7 128 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 LGI3Q8N145 548 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 RXFP4Q8TDU9 374 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 HS3ST6Q96QI5 342 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 IL36GQ9NZH8 169 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 CRIM1Q9NZV1 1036 aa15.48■□□□□ 0.07
VIM-206ENST00000487938 GPR137BO60478 399 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 IGHEP01854 428 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 AKR1C3P42330 323 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 ZNF616Q08AN1 781 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 SLC35G3Q8N808 338 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 LRTM2Q8N967 370 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 CT55Q8WUE5 264 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 FAM212BQ9NTI7 297 aaPredicted RBP15.47■□□□□ 0.07
VIM-206ENST00000487938 RCL1Q9Y2P8 373 aaKnown RBP15.47■□□□□ 0.07
VIM-206ENST00000487938 NOSIPQ9Y314 301 aaKnown RBP15.47■□□□□ 0.07
VIM-206ENST00000487938 FAM157AC9JC47 383 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 C1QL1O75973 258 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 TSPAN15O95858 294 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 PPYP01298 95 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 CRYBA1P05813 215 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 BCL3P20749 454 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 RPL35P42766 123 aaKnown RBP15.47■□□□□ 0.07
VIM-206ENST00000487938 PPT1P50897 306 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 AKR1D1P51857 326 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 GFRA1P56159 465 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 MIDNQ504T8 468 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 TMEM211Q6ICI0 200 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 ZFP82Q8N141 532 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 SLAMF9Q96A28 289 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 GPHA2Q96T91 129 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 RSRP1Q9BUV0 290 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 C1QTNF5Q9BXJ0 243 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 SH3BGRL3Q9H299 93 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 PARPBPQ9NWS1 579 aa15.47■□□□□ 0.07
VIM-206ENST00000487938 FREM1Q5H8C1 2179 aa15.46■□□□□ 0.07
VIM-206ENST00000487938 MRPL33O75394 65 aaKnown RBP15.46■□□□□ 0.07
VIM-206ENST00000487938 FOXG1P55316 489 aaPredicted RBP15.46■□□□□ 0.07
VIM-206ENST00000487938 ARF1P84077 181 aaKnown RBP15.46■□□□□ 0.07
VIM-206ENST00000487938 PEA15Q15121 130 aa15.46■□□□□ 0.07
VIM-206ENST00000487938 C2CD4CQ8TF44 421 aa15.46■□□□□ 0.07
VIM-206ENST00000487938 CPNE4Q96A23 557 aaPredicted RBP15.46■□□□□ 0.07
VIM-206ENST00000487938 PAPOLGQ9BWT3 736 aaKnown RBP15.46■□□□□ 0.07
VIM-206ENST00000487938 SLC7A10Q9NS82 523 aa15.46■□□□□ 0.07
VIM-206ENST00000487938 PCSK5Q92824 1860 aa15.46■□□□□ 0.07
VIM-206ENST00000487938 BORCS7-ASMTA0A0B4J1R7 106 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 MEX3AA1L020 520 aaKnown RBP15.46■□□□□ 0.06
VIM-206ENST00000487938 ST8SIA3O43173 380 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 CELA3AP09093 270 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 SPINK2P20155 84 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 RAB13P51153 203 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 UCP3P55916 312 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 HSD17B11Q8NBQ5 300 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 DMBX1Q8NFW5 382 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 OR56B2PQ8NGI1 322 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 LYPD6BQ8NI32 183 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 PSMF1Q92530 271 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 ARV1Q9H2C2 271 aa15.46■□□□□ 0.06
VIM-206ENST00000487938 FBXO9Q9UK97 447 aaPredicted RBP15.46■□□□□ 0.06
VIM-206ENST00000487938 C3orf85A0A1B0GTC6 90 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 HSPB6O14558 160 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 MPPED1O15442 326 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 GLAP06280 429 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 ZXDAP98168 799 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 FOXO1Q12778 655 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 ZNF528Q3MIS6 628 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 C6orf15Q6UXA7 325 aaPredicted RBP15.45■□□□□ 0.06
VIM-206ENST00000487938 SUMF1Q8NBK3 374 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 EXTL1Q92935 676 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 SPSB4Q96A44 273 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 THOC3Q96J01 351 aaKnown RBP15.45■□□□□ 0.06
VIM-206ENST00000487938 FGF23Q9GZV9 251 aaPredicted RBP15.45■□□□□ 0.06
VIM-206ENST00000487938 LRFN1Q9P244 771 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 ZNF175Q9Y473 711 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 DOCK10Q96BY6 2186 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 A0A1B0GV50 99 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 NKX2-6A6NCS4 301 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 HLA-HP01893 362 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 DANCRP0C864 163 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 SPP1P10451 314 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 GNRHRP30968 328 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 SNCAP37840 140 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 HAAOP46952 286 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 P2RY1P47900 373 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 CAMLGP49069 296 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 GPM6AP51674 278 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 SSPNQ14714 243 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 SPIN3Q5JUX0 258 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 GPR157Q5UAW9 335 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 C1orf210Q8IVY1 113 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms