RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 OR5D14Q8NGL3 314 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 OR5AK2Q8NH90 309 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 NPRL2Q8WTW4 380 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 FAM216AQ8WUB2 273 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 C22orf15Q8WYQ4 148 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 TMEM158Q8WZ71 300 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 TMIGD2Q96BF3 282 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 RBMXL1Q96E39 390 aaKnown RBP4.68□□□□□ -1.66
CUX1-208ENST00000485792 CEP19Q96LK0 163 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 OPALINQ96PE5 141 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 SPACA5Q96QH8 159 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 JMJD8Q96S16 334 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 SLC6A7Q99884 636 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 KRTAP9-2Q9BYQ4 174 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 PPIL3Q9H2H8 161 aaKnown RBP4.68□□□□□ -1.66
CUX1-208ENST00000485792 NCOR1P1Q9H4R4 102 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 ZCCHC4Q9H5U6 513 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 IFT22Q9H7X7 185 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 HMG20AQ9NP66 347 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 SNTG1Q9NSN8 517 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 IL36GQ9NZH8 169 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 TNCP24821 2201 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 MGAM2Q2M2H8 2515 aa4.68□□□□□ -1.66
CUX1-208ENST00000485792 TMEM89A2RUT3 159 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 FAM90A8PA6NJQ4 464 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 C17orf98A8MV24 154 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 H0YHG0 523 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 RNASEK-C17orf49H0YIS7 233 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SLC1A7O00341 560 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 NDUFB3O43676 98 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 PSPNO60542 156 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SERPINA3P01011 423 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 RBP4P02753 201 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 TK1P04183 234 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 CSN2P05814 226 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 CALCBP10092 127 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 CRHBPP24387 322 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 ATP1B3P54709 279 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 WNT4P56705 351 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 TPBGQ13641 420 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 ZNF273Q14593 569 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 PDCD1Q15116 288 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 KISS1Q15726 138 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 YIF1BQ5BJH7 314 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 LRRC10Q5BKY1 277 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SPIN3Q5JUX0 258 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 TMEM200BQ69YZ2 307 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 FAM53AQ6NSI3 398 aaPredicted RBP4.67□□□□□ -1.66
CUX1-208ENST00000485792 Q6P435 159 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 Q6YL49 198 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 TMPRSS11AQ6ZMR5 421 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SLC25A26Q70HW3 274 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 COMMD2Q86X83 199 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 LDLRAD3Q86YD5 345 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 MKXQ8IYA7 352 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 FAM58AQ8N1B3 248 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 LILRB2Q8N423 598 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 ZNF676Q8N7Q3 588 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 BOLLQ8N9W6 283 aaKnown RBP4.67□□□□□ -1.66
CUX1-208ENST00000485792 OR52N4Q8NGI2 321 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 TRMT10AQ8TBZ6 339 aaKnown RBP4.67□□□□□ -1.66
CUX1-208ENST00000485792 GPR148Q8TDV2 347 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 CORO2AQ92828 525 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 GHSRQ92847 366 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 BORCS8Q96FH0 119 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 KIRREL1Q96J84 757 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SNX22Q96L94 193 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 GFI1Q99684 422 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 MRI1Q9BV20 369 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SUCNR1Q9BXA5 334 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 LINC00574Q9H8X3 128 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 ISYNA1Q9NPH2 558 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 C19orf12Q9NSK7 152 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 SLC25A10Q9UBX3 287 aaPredicted RBP4.67□□□□□ -1.66
CUX1-208ENST00000485792 SLC7A11Q9UPY5 501 aa4.67□□□□□ -1.66
CUX1-208ENST00000485792 TRAV8-7A0A075B6U6 113 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 TRAV40A0A0B4J280 105 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 IGHV1-69DA0A0B4J2H0 117 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 A0A1W2PP11 408 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 FAM230AA0A1W2PPH8 454 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.66□□□□□ -1.66
CUX1-208ENST00000485792 DENRO43583 198 aaKnown RBP4.66□□□□□ -1.66
CUX1-208ENST00000485792 MMP23AO75900 390 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 TOX4O94842 621 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 ATP6V1G2O95670 118 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 IGHV1-69P01742 117 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 CHRM2P08172 466 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 BCL3P20749 454 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 FPR2P25090 351 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 SRP14P37108 136 aaKnown RBP4.66□□□□□ -1.66
CUX1-208ENST00000485792 UBE2E1P51965 193 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 MTCP1P56278 107 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 TAS2R43P59537 309 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 ARF6P62330 175 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 UBA52P62987 128 aaKnown RBP4.66□□□□□ -1.66
CUX1-208ENST00000485792 MEF2CQ06413 473 aaPredicted RBP4.66□□□□□ -1.66
CUX1-208ENST00000485792 Q499Y3 187 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 ARMCX4Q5H9R4 360 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 FAM27D1Q5T7N8 215 aa4.66□□□□□ -1.66
CUX1-208ENST00000485792 METTL11BQ5VVY1 283 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms